Pairwise Alignments

Query, 444 a.a., DEAD/DEAH box helicase from Pseudomonas simiae WCS417

Subject, 495 a.a., ATP-dependent RNA helicase RhlE from Azospirillum sp. SherDot2

 Score =  356 bits (914), Expect = e-103
 Identities = 195/427 (45%), Positives = 260/427 (60%), Gaps = 10/427 (2%)

Query: 3   FATLGLIEPLLRALETLGYQTPTPVQAQAIPAVLAGRDLMAAAQTGTGKTAGFAVPLLQL 62
           F+ LGLIEPLLRA+   GY T TP+QA AIP +LAGRD++  AQTGTGKTA F +P+LQ 
Sbjct: 4   FSGLGLIEPLLRAVAEEGYSTATPIQAGAIPLLLAGRDVLGLAQTGTGKTAAFTLPILQR 63

Query: 63  LTMEGPKVAANSARALILCPTRELAEQVHASVAEYAQNLPLTTYAVYGGVSINPQMMKLR 122
           L     +VAA S R LIL PTRELA Q+  S   Y ++LP+    ++GGV  +PQ+  + 
Sbjct: 64  LFQNKKRVAAKSPRVLILTPTRELALQIGDSFTTYGRHLPIRRTVIHGGVGQSPQVSAIA 123

Query: 123 KGVDILVATPGRLIDLFRQNALKLNQLQTLVLDEADRMLDLGFSEELANIYRMLPKKRQT 182
           +GV++L+ATPGRL+DL  QN + L  ++  VLDEADRMLD+GF  ++  +  +LPK RQT
Sbjct: 124 RGVEVLIATPGRLLDLMAQNHVNLGTIEFFVLDEADRMLDMGFIRDVRKVVAVLPKDRQT 183

Query: 183 LLFSATFSDDIRLLAGQMLNDPLSIEVSPRNVAANTVKQWVVPVDKKRKPELFVHLMRKG 242
           LLFSAT  D +  LA  +L D   IEV+P++     + Q V+ VD+  K  L   L+   
Sbjct: 184 LLFSATMPDAVVDLANSILTDAERIEVTPQSTTVERINQRVLFVDRADKRRLLADLLEDS 243

Query: 243 RWKQVLVFAKTRNGVDALVDKLQGLGINADGIHGDKPQATRQRALDRFKSSEVQILVATD 302
              + +VFA+T++G D + D L+  GI AD IHGDK Q+ R RAL+ F++ E++ LVATD
Sbjct: 244 AMARTIVFARTKHGADRIADHLKKAGITADAIHGDKSQSARVRALESFRNGELRALVATD 303

Query: 303 VAARGLDIEDLPLVVNFDLPIVAEDYIHRIGRTGRAGNTGEAISLVCADEVNMLSAIEML 362
           +AARG+DI+ +  V+NFDLP   E Y+HRIGRT RAG  G A+S    +EV  L  IE  
Sbjct: 304 IAARGIDIDGISHVINFDLPNEPESYVHRIGRTARAGTDGSAVSFCDHEEVGYLKDIEKT 363

Query: 363 TRQTLTRHMEQDFEPEHRVPDTDASGQVVKKPKKPKKPKSSGGGGKRNLGKWVDSGEVAP 422
            RQ +         P H V          K P +PK P S+     RN        +  P
Sbjct: 364 IRQPIP---ADTTHPYHAVEVAQIHAS-SKPPPRPKAPGSNRNQNNRN------QQQARP 413

Query: 423 AEPSIKP 429
           A P   P
Sbjct: 414 AAPKAAP 420