Pairwise Alignments

Query, 339 a.a., flagellar motor protein MotB from Pseudomonas simiae WCS417

Subject, 346 a.a., flagellar motor protein MotB from Erwinia tracheiphila SCR3

 Score =  197 bits (502), Expect = 2e-55
 Identities = 126/350 (36%), Positives = 185/350 (52%), Gaps = 46/350 (13%)

Query: 3   NNQPIIIKRVKRFAAGHHG-GAWKIAFADFATAMMAFFLVLWLMSTATPEQKIAIAGYFK 61
           N  PII+ R K+      G G+WKIA+ADF TA+MAFF+V+WL+S +TP Q+ +IA YFK
Sbjct: 4   NTHPIIVVRKKKHKGNEGGHGSWKIAYADFMTALMAFFMVMWLISISTPAQRESIAEYFK 63

Query: 62  DPIGFSESGTPFVIDLGGSPQLAPERTINPEIKTESPQEKIPIERDTVEAMAEQ--VEQE 119
                    TP  + + G  + +   ++ P    + P +KI      V+  AE+  +++ 
Sbjct: 64  ---------TPLKVAITGGTRTSESVSVIPG-GGQDPTQKIGEVHKVVDMDAEKRNMDKI 113

Query: 120 RLELLLQELQNKVEENPQLLKFKDQISFEITPDGLRIQITDAANRPMFDSGSARLKPYFE 179
           RL  L ++L   +E +P+L   +  +   +  +GLRIQI D+ NRPMF +GSA ++PY  
Sbjct: 114 RLNRLREKLDQLIEADPRLKALRQHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMR 173

Query: 180 DILLAMADTIKAVPNKISISGHTDAKPYA-GQGDFGNWELSANRANAARRALVAGSYPDP 238
           DIL A+A  +  +PNKIS++GHTD   YA G   + NWELS +RANA+RR LV G     
Sbjct: 174 DILRAIAPILNNIPNKISLAGHTDDFQYATGDRGYSNWELSTDRANASRRELVIGGLDAG 233

Query: 239 QVARVVGFASSQLFDAKDPFNPINRRIDIVVLTKKAQRAIEGD----------------- 281
           ++ RV+G A +   + +   + +NRRI ++VL    +  IE +                 
Sbjct: 234 KMLRVLGMADTMKLNNRGANDAVNRRISLLVLNHDTEMQIEKENSESDAVQIDNSDPANL 293

Query: 282 -----PP--------PAPQPTQGAGAPGEVPADPNAIPPGQEPLPAHELR 318
                PP        PAPQP+Q   A  +    P A   GQ   PA   R
Sbjct: 294 KQIVAPPIPSAANNNPAPQPSQAESAGSK--NVPKAFSSGQPATPAQTER 341