Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 168 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 73.9 bits (180), Expect = 1e-18
 Identities = 48/152 (31%), Positives = 86/152 (56%), Gaps = 4/152 (2%)

Query: 6   LKGLFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNL 65
           ++ ++ +H   L G+L  K+ +   AAD+  ++F+R+       +I   + YL   A  L
Sbjct: 10  VQNIYEQHHSWLHGWLKGKLHNACDAADVAHDTFVRILGGRHAAQILEPRDYLATIARGL 69

Query: 66  LIDHIRQEARRKTDAVPHEALAEIEDEVA-GLEAQAMAQQQRQALKQALAELPERTQQIF 124
           +ID  R+ A    +    + LAE  D  A   E +A+  +   A+ +ALA L ER ++IF
Sbjct: 70  VIDRYRRHA---IEQAYKQTLAERPDATAISEEDKAIIIETLVAVDKALAGLGERARRIF 126

Query: 125 RLNRIEGMTHAQVARHLDISDSSVQKHLAKAL 156
            L+++EG+T+ Q+A  L +S ++V+KH+ +AL
Sbjct: 127 MLSQVEGLTYQQIADELQVSLTTVKKHMIRAL 158