Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 172 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 86.3 bits (212), Expect = 3e-22
 Identities = 53/160 (33%), Positives = 87/160 (54%), Gaps = 3/160 (1%)

Query: 1   MSDVDLKGLFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYR 60
           MS      +FL     L   L R V +   A DL+QE++LR+    +   ID+ + ++Y+
Sbjct: 1   MSQSRFNHVFLTQRVMLLRTLQRMVNNHSTAEDLLQETYLRVTRALSERPIDHLEPFVYQ 60

Query: 61  TASNLLIDHIRQ---EARRKTDAVPHEALAEIEDEVAGLEAQAMAQQQRQALKQALAELP 117
           TA NL +DH+R    +AR   + VP + L  +   ++  E    A+Q  +AL  +L +L 
Sbjct: 61  TARNLALDHLRARRIQARTLQENVPLDVLQSVAAPISTPEDATQAEQMLEALSVSLGQLS 120

Query: 118 ERTQQIFRLNRIEGMTHAQVARHLDISDSSVQKHLAKALA 157
            R Q+IF L+R+ G ++ ++A  L +S S+VQK L   +A
Sbjct: 121 ARQQRIFILSRLHGCSYQEIADQLGVSLSTVQKELKLIMA 160