Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 180 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 82.8 bits (203), Expect = 3e-21
 Identities = 53/165 (32%), Positives = 92/165 (55%), Gaps = 7/165 (4%)

Query: 6   LKGLFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNL 65
           L  ++ +H   L G+L +K+   Q AADL  ++F+R+      ++I   + +L  TA  L
Sbjct: 17  LTAMYSEHHGWLHGWLRKKLGCSQHAADLAHDAFIRVLMLAEPQQIKEPRAFLATTAGRL 76

Query: 66  LIDHIRQEARRKTDAVPHEALAEIEDEVAGLEAQAMAQQQRQALK---QALAELPERTQQ 122
           LID  R   RR+ +    EAL  I+ E AG+   A      QAL+   + LA LP + ++
Sbjct: 77  LIDGAR---RRRIEKAYMEALV-IQCEDAGMPDPAAIHVALQALERIAEMLAGLPAKARE 132

Query: 123 IFRLNRIEGMTHAQVARHLDISDSSVQKHLAKALAYVMQRLQDGE 167
            F L+R++G+T++++A  LD+S S+V+ +++ AL +    L   +
Sbjct: 133 AFLLSRLDGLTYSEIATRLDVSASTVKNYISSALVHCYHSLHPAD 177