Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 166 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 85.9 bits (211), Expect = 3e-22
 Identities = 49/154 (31%), Positives = 89/154 (57%), Gaps = 3/154 (1%)

Query: 10  FLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLIDH 69
           F +H + L G   R++R+ Q A DL  ++F+R+ E  + E ++  + YL++TA N+ +D 
Sbjct: 11  FFEHYEELIGTWTRRLRNRQQAEDLAHDTFVRVLESKSSE-VEQPRAYLHQTARNIAVDA 69

Query: 70  IRQEARRKTDAVPHEALAEIEDEVAGLEAQAMAQQQRQALKQALAELPERTQQIFRLNRI 129
            R+E RR  +A+  EA  +        E    A Q   ++++AL+ELP   ++IF   +I
Sbjct: 70  YRREDRR--EAITLEAFDQRSPNSGDPEHFMHAIQLADSIERALSELPLNCRKIFIWQKI 127

Query: 130 EGMTHAQVARHLDISDSSVQKHLAKALAYVMQRL 163
           EG+T  ++A  L +S + V+K++ + L ++  RL
Sbjct: 128 EGLTQQEIAERLGLSKNMVEKYMIRTLRHLRDRL 161