Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 75.1 bits (183), Expect = 6e-19
 Identities = 48/149 (32%), Positives = 83/149 (55%), Gaps = 4/149 (2%)

Query: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLID 68
           L+  H   LRG+L+R+    + AADL QE+F+RL      + +   + YL   A +L+ID
Sbjct: 15  LYHAHHAWLRGWLSRRTGCREHAADLAQETFVRLLNARRQQTLQQPRAYLSSIARSLMID 74

Query: 69  HIRQEARRKTDAVPHEALAEI-EDEVAGLEAQAMAQQQRQALKQALAELPERTQQIFRLN 127
             R   RR+ +    E+LA   + EV   E + +     + + + L +L  R ++ F L 
Sbjct: 75  QYR---RRELERAYLESLAHFPQVEVPSEETRLLILDSLERIDRLLDQLKPRVREAFLLA 131

Query: 128 RIEGMTHAQVARHLDISDSSVQKHLAKAL 156
           +++G+T AQ+A  L +S ++V++ L+KAL
Sbjct: 132 QLDGLTCAQIALRLGVSKATVERDLSKAL 160