Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 179 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 80.1 bits (196), Expect = 2e-20
 Identities = 54/166 (32%), Positives = 88/166 (53%), Gaps = 15/166 (9%)

Query: 11  LKHADTLRGY-------LARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTAS 63
           L  AD  RG+       L ++  +   AAD+ Q+ F +  +     +++  + +L++ A 
Sbjct: 8   LLSADAFRGFYTDILYFLRKRTDNASDAADMTQDVFTQWLDYRDRAKVEQPRAFLFQMAR 67

Query: 64  NLLIDHIRQEARRKTDAVPHEALAEIEDEVAGLE-----AQAMAQQQRQALKQALAELPE 118
           NLL DH R++  R T    H   A+++ E A  E     A     Q+ + LK+ LAEL  
Sbjct: 68  NLLRDHWRKQKVRHT---VHSDQADMDAEPATDEQNDPMAAVQRLQRLEQLKEVLAELSP 124

Query: 119 RTQQIFRLNRIEGMTHAQVARHLDISDSSVQKHLAKALAYVMQRLQ 164
           R ++   L+R EG++ AQ+A  + IS S V+KH+A AL +  +RLQ
Sbjct: 125 RRREALMLHRFEGLSQAQIAERMGISTSMVEKHIAFALLHCKRRLQ 170