Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 169 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 81.6 bits (200), Expect = 6e-21
 Identities = 50/154 (32%), Positives = 86/154 (55%), Gaps = 4/154 (2%)

Query: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLID 68
           L+  H   L+G+L R++ D + AAD+ Q++FLRL           S+ YL + A NL+ID
Sbjct: 14  LYRDHHGWLQGWLRRRLGDREHAADVAQDTFLRLLVSGRFPGDKESRSYLAQIARNLVID 73

Query: 69  HIRQEARRKTDAVPHEALAEI-EDEVAGLEAQAMAQQQRQALKQALAELPERTQQIFRLN 127
             R   R + +    E++A + E E   LE +A+  +    +   L  +P+  +Q F L+
Sbjct: 74  QWR---RLRIERAYLESIAHLPEPESPSLETRALILETLMQIDAMLDRMPDNVRQAFLLS 130

Query: 128 RIEGMTHAQVARHLDISDSSVQKHLAKALAYVMQ 161
           + EG+++AQ+A  L ++ SSVQK++ +A+    Q
Sbjct: 131 QFEGLSYAQIAERLGVTVSSVQKYMTRAIVACYQ 164