Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 192 a.a., RNA polymerase subunit sigma-24 from Pseudomonas simiae WCS417

 Score = 90.9 bits (224), Expect = 1e-23
 Identities = 56/150 (37%), Positives = 84/150 (56%), Gaps = 6/150 (4%)

Query: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLID 68
           +FL     +   ++R+V     AADLVQ+ FLR   +P  + ++    YL R A N+ ID
Sbjct: 27  VFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPLVQ-VEELSTYLLRCAGNIAID 85

Query: 69  HIRQEARRKTDAVPHEALAEIEDEVAGLEAQAM--AQQQRQALKQALAELPERTQQIFRL 126
           H+R E  R   +   E     + +  G E QA   A    + ++ AL  LPERT+QIF L
Sbjct: 86  HLRSEGARARSS---EGWLPEQQDNQGSEPQAALEAGNDLRHVEAALRSLPERTRQIFLL 142

Query: 127 NRIEGMTHAQVARHLDISDSSVQKHLAKAL 156
           NRI G  +AQ+A+ + +S S+V+KH+ +AL
Sbjct: 143 NRIHGRKYAQIAKAMGLSQSAVEKHMMRAL 172