Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 162 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 71.6 bits (174), Expect = 6e-18
 Identities = 47/148 (31%), Positives = 81/148 (54%), Gaps = 4/148 (2%)

Query: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLID 68
           L+  H   L G+L RK+  P+ AADL Q++F+R+        +   + +L   A  +L +
Sbjct: 10  LYNDHHHWLTGWLRRKLGCPESAADLAQDTFMRVLTAREAPTLIEPRAFLTTVAKRVLFN 69

Query: 69  HIRQEARRKTDAVPHEALAEIEDEVAGLEAQ-AMAQQQRQALKQALAELPERTQQIFRLN 127
             R   R+  +    +ALA++ + VA  E + A+  Q    L Q L  LP + ++ F L 
Sbjct: 70  FYR---RQDLERAYLDALAQMPEHVAPSEEERAIILQTLVELDQLLDGLPVQVKRAFLLA 126

Query: 128 RIEGMTHAQVARHLDISDSSVQKHLAKA 155
           + +G+T+AQ+   L IS ++V++HL+KA
Sbjct: 127 QCDGLTYAQIGAELGISIATVKRHLSKA 154