Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 70.5 bits (171), Expect = 2e-17
 Identities = 49/151 (32%), Positives = 86/151 (56%), Gaps = 7/151 (4%)

Query: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLR-LAEKPAGERIDNSQGYLYRTASNLLI 67
           L  ++   L  + AR +R+   AAD+VQES+ R LA + +   I + +  LY+TA ++++
Sbjct: 1   LVTRYYRELLNFCARALRNRDAAADIVQESYARVLAIERSSVPIGDPRALLYQTARHVMV 60

Query: 68  DHIRQEARRKTDAVPHEALAEIEDEV--AGLEAQAM--AQQQRQALKQALAELPERTQQI 123
           D  R+   R+ D +   AL+E E  V  A L+  A+  + Q  QA    +  LP R ++ 
Sbjct: 61  DQHRRNLLREHDDLA--ALSESEQPVLPAHLQPDAILASAQAVQAYVATIEALPPRCREA 118

Query: 124 FRLNRIEGMTHAQVARHLDISDSSVQKHLAK 154
           F L+  +G++HA++A  +  S S ++KH+A+
Sbjct: 119 FVLHVFDGLSHAEIAARMGASVSMIEKHVAR 149