Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 210 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 72.8 bits (177), Expect = 4e-18
 Identities = 58/175 (33%), Positives = 83/175 (47%), Gaps = 27/175 (15%)

Query: 5   DLKGLFLKHADTLRGYLARKVRDPQLAADLVQESFLRL---------------AE----- 44
           DL    + H   LR  L R +RDP  AAD+ Q SF R+               AE     
Sbjct: 3   DLVQELVAHYADLRRQLTRDLRDPHYAADIAQSSFERVFAQATKSLGAARGTGAEVAAPD 62

Query: 45  --KPAGERIDNSQGYLYRTASNLLIDHIRQEARRKTDAVPHEALAEIEDEVAGLEAQAMA 102
             K AG  I++ +  L+R A NL ID  R   RRK         A I   +    ++ + 
Sbjct: 63  DAKDAGSGIESPRALLFRVARNLCIDDAR---RRKVAQEWVGTHAAIGTHLVAPSSEFIL 119

Query: 103 QQQRQALK--QALAELPERTQQIFRLNRIEGMTHAQVARHLDISDSSVQKHLAKA 155
            QQR   +  + + +LP R +Q+F L R  G T A++A+ LDI++ +V KHL +A
Sbjct: 120 AQQRVLARVVETMEKLPPRRRQVFLLFRAYGHTRAEIAQQLDITEMAVAKHLLRA 174