Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 87.0 bits (214), Expect = 2e-22
 Identities = 57/157 (36%), Positives = 84/157 (53%), Gaps = 9/157 (5%)

Query: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLR-LAEKPAGERIDNSQGYLYRTASNLLI 67
           +F ++   L  +L R V+D   AADLVQES+ R L  +  GE I + +  LYRTA NLLI
Sbjct: 1   VFTRYYRELLHFLGRSVKDQHTAADLVQESYARVLVAQKNGEDIVDPRALLYRTARNLLI 60

Query: 68  DHIRQEARRKTDAVPHEALAEIEDEVAGL--------EAQAMAQQQRQALKQALAELPER 119
           D  R +  R+          E E+ ++ L        E    ++Q  QAL   + ELP R
Sbjct: 61  DRHRHDQVRRAALGETVDTDEDEETLSQLAAPPAFEPEVAVASRQGVQALLTTIGELPVR 120

Query: 120 TQQIFRLNRIEGMTHAQVARHLDISDSSVQKHLAKAL 156
            +Q F L++ EG++HA+VA  + I+   V+KH+   L
Sbjct: 121 CRQAFMLHKFEGLSHAEVAEEMGITVKMVEKHIKMGL 157