Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 191 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 87.8 bits (216), Expect = 1e-22
 Identities = 53/141 (37%), Positives = 82/141 (58%), Gaps = 4/141 (2%)

Query: 17  LRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLIDHIRQEARR 76
           +   ++R+V     A+DLVQE FLR   +P   +++    YL R A NL IDH+R E+ R
Sbjct: 32  MEALVSRRVGCRATASDLVQELFLRFWRRPE-VKVEALDTYLLRCAGNLAIDHLRSESSR 90

Query: 77  KTDAVPHEALAEIEDEVAGLEAQAM-AQQQRQALKQALAELPERTQQIFRLNRIEGMTHA 135
             + V   A+   E  +A    QA+      Q ++  L  LPERT+QIF LNRI G  ++
Sbjct: 91  --ERVAEAAVPVSEASLAQAPEQAVEVDHDLQRIEATLRALPERTRQIFLLNRIHGCKYS 148

Query: 136 QVARHLDISDSSVQKHLAKAL 156
           ++A+ + +S S+V+KH+ +AL
Sbjct: 149 EIAKAMQLSQSAVEKHMMRAL 169