Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

 Score =  101 bits (252), Expect = 1e-26
 Identities = 57/163 (34%), Positives = 93/163 (57%), Gaps = 1/163 (0%)

Query: 10  FLKHADTLRGYLARKVRDPQLAADLVQESFLRLAE-KPAGERIDNSQGYLYRTASNLLID 68
           F +H D L  +L R++ D Q AAD+ QE++L+L         + +++ +++R A NL ID
Sbjct: 13  FQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARSFIFRVAGNLAID 72

Query: 69  HIRQEARRKTDAVPHEALAEIEDEVAGLEAQAMAQQQRQALKQALAELPERTQQIFRLNR 128
            +R+E R        +   E+       EA  +A+++ Q L QAL +LP+  +Q   LNR
Sbjct: 73  ALRREQRIAASHDDSDGACEVACPAPAPEAALLARERLQILDQALLQLPDNARQALLLNR 132

Query: 129 IEGMTHAQVARHLDISDSSVQKHLAKALAYVMQRLQDGEVAPS 171
           +EG+T  QVA+ L +S+S V K++ +AL +   RL+   VA S
Sbjct: 133 VEGLTQKQVAQRLGVSESMVAKYIGQALRHCRGRLKQAGVAAS 175