Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 170 a.a., RNA polymerase subunit sigma-24 from Pseudomonas putida KT2440

 Score = 95.1 bits (235), Expect = 5e-25
 Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 3/163 (1%)

Query: 1   MSDVDLKGLFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYR 60
           MS      +FL    TL   L R V +P  A DL+QE++LR++       I++ + ++++
Sbjct: 1   MSQSRFNSVFLVQRLTLLRTLQRMVGNPSTAEDLLQETYLRVSRALGERPIEHIEPFVFQ 60

Query: 61  TASNLLIDHIRQ---EARRKTDAVPHEALAEIEDEVAGLEAQAMAQQQRQALKQALAELP 117
           TA NL +DH+R    +AR   D VP E L  +       E  A A+Q  + L  +L +L 
Sbjct: 61  TARNLALDHLRARRVQARMLVDDVPDEVLHSVAAPATSSEDAAHAEQLLKHLSVSLNQLS 120

Query: 118 ERTQQIFRLNRIEGMTHAQVARHLDISDSSVQKHLAKALAYVM 160
           ER Q+IF L+R+ G T+ ++A  L +S S+VQK L   +A  M
Sbjct: 121 ERQQRIFILSRLHGATYLEIAEQLSVSPSTVQKELKLIMAICM 163