Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 161 a.a., ECF subfamily RNA polymerase sigma-24 factor from Pseudomonas putida KT2440

 Score = 90.9 bits (224), Expect = 1e-23
 Identities = 51/154 (33%), Positives = 89/154 (57%), Gaps = 3/154 (1%)

Query: 10  FLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLIDH 69
           FL H   L G   RK+R  Q A DL  ++F+R+ E P  E+++  + YL++ A N+ +D 
Sbjct: 7   FLDHYHELIGTWTRKLRSRQQAEDLTHDAFVRVLETPR-EQVEQPRAYLHQAARNIAVDG 65

Query: 70  IRQEARRKTDAVPHEALAEIEDEVAGLEAQAMAQQQRQALKQALAELPERTQQIFRLNRI 129
            R+E RR+  A+  EA  E        EA   A +   ++++ALAELP   +Q+F   ++
Sbjct: 66  FRREDRRQ--ALEREAFEEGATGSGDPEAYVHALELADSVERALAELPLNCRQVFIWQKL 123

Query: 130 EGMTHAQVARHLDISDSSVQKHLAKALAYVMQRL 163
           EG+T A++A  + +S + V+K++ + L ++ + L
Sbjct: 124 EGLTQAEIAERMGLSKNMVEKYMIRTLRHLREHL 157