Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 171 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 76.6 bits (187), Expect = 2e-19
 Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 4/149 (2%)

Query: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLID 68
           L+  H   LRG+L  +V   + AADL Q++F+RL        +   + YL   A  L+ID
Sbjct: 15  LYQSHHTWLRGWLRSRVGCSEHAADLAQDTFVRLLRARQMSPLKEPRAYLSSIARGLMID 74

Query: 69  HIRQEARRKTDAVPHEALAEI-EDEVAGLEAQAMAQQQRQALKQALAELPERTQQIFRLN 127
             R   RR  +    E LA + E EV   E + +     + L +AL +L  R +Q F L 
Sbjct: 75  QFR---RRALERAYQEGLAHLPEAEVPSEEDKLVILDSLERLDRALQQLKPRVRQAFLLA 131

Query: 128 RIEGMTHAQVARHLDISDSSVQKHLAKAL 156
           +++G++  QVA+ L +S ++V++ LAKAL
Sbjct: 132 QLDGLSIVQVAQRLGVSRATVERDLAKAL 160