Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 178 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 75.9 bits (185), Expect = 4e-19
 Identities = 50/169 (29%), Positives = 92/169 (54%), Gaps = 7/169 (4%)

Query: 5   DLKGLFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKP-AGERIDNSQGYLYRTAS 63
           DL+ L+  H   +R +L RK+ +   AA+L Q+ F+RL  KP      ++++ YL R + 
Sbjct: 13  DLEELYRSHHGWIRQWLQRKLGNAHDAAELAQDVFVRLLSKPRVFNDHEHARAYLGRMSR 72

Query: 64  NLLIDHIRQEARRKTDAVPHEALAEIEDEVA-GLEAQAMAQQQRQALKQALAELPERTQQ 122
           N  +D  R   RR+ +    E LA   +++A  LE QA+  +  + L+     +P+R  +
Sbjct: 73  NACVDFWR---RRRVEQAYLEVLAAQPEQLAPSLEHQAVILETLEQLQAMFERMPQRVAE 129

Query: 123 IFRLNRIEGMTHAQVARHLDISDSSVQKHLAKAL--AYVMQRLQDGEVA 169
            F + +++GM   ++A  L +S+ SV  +LA+A+    +++   DG +A
Sbjct: 130 AFSMAQLQGMKQREIAEQLGVSERSVNSYLAQAMYQCLLLEAELDGSLA 178