Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 188 a.a., putative RNA polymerase sigma factor FecI from Pseudomonas sp. DMC3

 Score = 89.0 bits (219), Expect = 4e-23
 Identities = 58/159 (36%), Positives = 86/159 (54%), Gaps = 6/159 (3%)

Query: 9   LFLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLID 68
           +FL     +   + R+V     AADLVQ+ FLR   +P  + ++    YL R A N+ ID
Sbjct: 24  VFLSQRAQMEALVNRRVGCRATAADLVQDLFLRFWRRPLVQ-VEELSTYLLRCAGNIAID 82

Query: 69  HIRQEARRKTDAVPHEALAEIEDEVAGLEAQAM--AQQQRQALKQALAELPERTQQIFRL 126
           H+R E  R      +E     E +  G E QA   A    + ++ AL  LPERT+QIF L
Sbjct: 83  HLRSEGTRTR---VNEGWQPDEPDSHGSEPQAALEAGNDLRHVEAALRALPERTRQIFLL 139

Query: 127 NRIEGMTHAQVARHLDISDSSVQKHLAKALAYVMQRLQD 165
           NRI G  +A++A+ + +S S+V+KH+ +AL      L+D
Sbjct: 140 NRIHGRKYAEIAKAMGLSQSAVEKHMMRALEACKASLRD 178