Pairwise Alignments

Query, 173 a.a., RNA polymerase sigma70 from Pseudomonas simiae WCS417

Subject, 163 a.a., putative RNA polymerase sigma factor FecI from Pseudomonas sp. DMC3

 Score = 84.0 bits (206), Expect = 1e-21
 Identities = 48/154 (31%), Positives = 86/154 (55%), Gaps = 3/154 (1%)

Query: 10  FLKHADTLRGYLARKVRDPQLAADLVQESFLRLAEKPAGERIDNSQGYLYRTASNLLIDH 69
           F +H + L G   R++R+   A DL  ++FLR+ E  +   +   + YL++TA N+ +D 
Sbjct: 8   FFEHYEELIGTWTRRLRNRAQAEDLAHDTFLRVLEADSAA-VQQPRAYLHQTARNIAVDG 66

Query: 70  IRQEARRKTDAVPHEALAEIEDEVAGLEAQAMAQQQRQALKQALAELPERTQQIFRLNRI 129
            R+E RR    +  EA+ +        E    A Q   ++++AL ELP   ++IF   +I
Sbjct: 67  YRREDRR--GVMESEAVEDTASSAGDPEHYMHAIQLADSIERALTELPLNCRKIFVWQKI 124

Query: 130 EGMTHAQVARHLDISDSSVQKHLAKALAYVMQRL 163
           EG+T A++A  L +S + V+K++ + L ++ +RL
Sbjct: 125 EGLTQAEIAERLGLSKNMVEKYMIRTLRHLRERL 158