Pairwise Alignments

Query, 283 a.a., flagellar motor protein MotA from Pseudomonas simiae WCS417

Subject, 290 a.a., flagellar motor protein from Agrobacterium fabrum C58

 Score =  212 bits (539), Expect = 9e-60
 Identities = 111/280 (39%), Positives = 168/280 (60%), Gaps = 10/280 (3%)

Query: 4   IIGIIVVFASVLGGYVLSHGKIAALIQPFEVMIIGGAALGAFLQANPGYMTMHVIKKSLG 63
           +IG+I+ F  ++GGY+   G +  L+QPFE+MIIGGA LG F+ ANP    M V+K S  
Sbjct: 4   VIGLIITFGCIIGGYMAMGGHLNVLVQPFELMIIGGAGLGGFIMANP----MKVVKDSGK 59

Query: 64  MFGSRFTHTF-----YLEVLGLVYEILNKSRREGMMAIEADIEDAAASPIFAKYPAVLKD 118
             G  F H+      YL+VLG++Y ++   R +    IEA I++   S IF   P+VLK+
Sbjct: 60  ALGEAFKHSVPKERNYLDVLGVLYSLMRDLRTKSRNEIEAHIDNPEESSIFQSAPSVLKN 119

Query: 119 ERMTAYICDYLRIMSSGNMAPHELEGLFDMELFSLKEELEHPSHAVTGIADGMPGFGIVA 178
           + +T++ICDY+R++  GN   HE+E L D E+ ++  +   P HA+T + D  P  GIVA
Sbjct: 120 KELTSFICDYVRLIIIGNARSHEIEALMDEEIETILHDKLKPYHAITTMGDSFPAIGIVA 179

Query: 179 AVLGIVVTMASLGEGDQAAIGMHVGAALVGTFFGILAAYGFFGPLATSLAHDAKEEINLY 238
           AVLG++  M  + E  +   G+ +GAALVGT  GI+ +Y    PLA+ +     ++  LY
Sbjct: 180 AVLGVIKAMGKINESPEVLGGL-IGAALVGTMLGIILSYSICNPLASQVKIVRTKQHRLY 238

Query: 239 ESIKASLVASASGMPPSLAVEFGRKVLYPKHRPSFAELEQ 278
             +K +L+A  +G  P +A+E+GRK +    RPS   +EQ
Sbjct: 239 IIVKQTLIAYMNGSVPQVALEYGRKTISNYERPSIDAVEQ 278