Pairwise Alignments

Query, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

Subject, 450 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas fluorescens SBW25

 Score =  101 bits (252), Expect = 3e-26
 Identities = 99/362 (27%), Positives = 164/362 (45%), Gaps = 36/362 (9%)

Query: 8   YTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQN----FRLRAEFRLWREGGERHYAM-FS 62
           +  QL  K   L + L+     EPQ + +PL      +R RA   +  +   +H A+ F 
Sbjct: 107 HAEQLALKQRMLAEQLSRVAGVEPQEWAAPLSGPEFGYRRRARVAVRWDAKAKHLAVGFR 166

Query: 63  QDDKRTPILIEAFPI---ASTRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMIT 119
               +  + I+  P+   A   I Q +P +        AL H       +   +G ++  
Sbjct: 167 AVASQDIVAIDDCPVLVQALQPIMQRLPNMLRRLSKPQALGH-------VEVFSGTSIAV 219

Query: 120 LCYHR-PLDEHWHTAARQLAADLNVSIIGRSKGKRDVIGHDYVVE-KLDVGGRTFSYRQP 177
           L  H  PL E      ++     +  +    +G+ + +  D V+  +L+      +YR  
Sbjct: 220 LLRHMAPLSEADLHILKEFCTFHDAQLWLHGEGQPEPVDADAVLGFRLEQWDLELAYRP- 278

Query: 178 EGAFTQPNGTVNQKMLNWAYEALGDRPDD-LLELYCGNGNFTLPLATRVRKVLATEISKT 236
            G F Q N  VN  M+  A E L  +PD+ +L+L+CG GNF LPLA +VR+V+A E  +T
Sbjct: 279 -GDFVQVNAGVNAAMVAQALEWLAPQPDERVLDLFCGLGNFALPLARQVREVVAVEGVQT 337

Query: 237 SVNAALSNLDENAVDNVTLVRLS-AEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPR 295
            V+ A  N   N + N    +   ++ LT+A             +     F +V +DPPR
Sbjct: 338 MVDRAAVNAVSNNLHNAQFFQADLSQPLTDA-------------EWAKQGFSAVLLDPPR 384

Query: 296 AGMDPDTCEL-TRRFDNILYISCNPETLAANIAQL-HDTHKITQCAMFDQFPWTHHMESG 353
            G      +L T +   ++Y+SCNP TLA +  +L    +++ +  + D FP T H+E+ 
Sbjct: 385 DGALEVVRKLATLKAKRLVYVSCNPATLARDTVELVKQGYRLKRAGILDMFPQTAHVEAM 444

Query: 354 VL 355
            L
Sbjct: 445 AL 446