Pairwise Alignments

Query, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

Subject, 367 a.a., tRNA (uridine(54)-C5)-methyltransferase TrmA from Serratia liquefaciens MT49

 Score =  352 bits (903), Expect = e-102
 Identities = 176/358 (49%), Positives = 243/358 (67%), Gaps = 6/358 (1%)

Query: 7   RYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDK 66
           RY  QL +K  RL+ L++PF APEP+VF S ++++R+RAEFR+W +  E ++ MF Q  K
Sbjct: 10  RYDDQLAEKTARLKTLMSPFTAPEPEVFRSQVEHYRMRAEFRIWHDEDEMYHIMFDQQTK 69

Query: 67  RTPILIEAFPIASTRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPL 126
           +  I +E FP AS  IN+LM  L AA +    L  KLFQ+++L+T +G  + +L YHR L
Sbjct: 70  QR-IRVEQFPAASELINRLMSALIAAIKPDPILRRKLFQIDYLSTRSGKIIASLLYHRKL 128

Query: 127 DEHWHTAARQLAADL-----NVSIIGRSKGKRDVIGHDYVVEKLDVGGRTFSYRQPEGAF 181
           D+ W   A +L  DL     ++ +IGR+   + ++  DYV E L V GR   YRQ E +F
Sbjct: 129 DDAWQQQAEKLRDDLRAQGFDLQLIGRASKMKIMLDQDYVDEVLPVAGRDMIYRQVENSF 188

Query: 182 TQPNGTVNQKMLNWAYEALGDRPDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 241
           TQPN  +N +ML WA +       DLLELYCGNGNF+L LA    +VLATEI+K SV AA
Sbjct: 189 TQPNAAMNIQMLEWALDVTAGSKGDLLELYCGNGNFSLALARNFERVLATEIAKPSVAAA 248

Query: 242 LSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPD 301
             N+  N +DNV ++R++AE+ T+A+N VR F RL GIDL SY   ++FVDPPR+G+D +
Sbjct: 249 QYNIAANHIDNVQIIRMAAEDFTQAMNGVREFNRLKGIDLSSYNCETIFVDPPRSGLDDE 308

Query: 302 TCELTRRFDNILYISCNPETLAANIAQLHDTHKITQCAMFDQFPWTHHMESGVLLTRR 359
           T ++ + +  ILYISCNPETL AN+  L +TH+I++ A+FDQFP+THHME GVLL +R
Sbjct: 309 TVKMVQAYPRILYISCNPETLCANLETLQETHQISRLALFDQFPYTHHMECGVLLEKR 366