Pairwise Alignments

Query, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

Subject, 366 a.a., tRNA/tmRNA (uracil-C(5))-methyltransferase from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  355 bits (911), Expect = e-102
 Identities = 175/358 (48%), Positives = 246/358 (68%), Gaps = 6/358 (1%)

Query: 7   RYTAQLQDKVTRLRDLLAPFDAPEPQVFDSPLQNFRLRAEFRLWREGGERHYAMFSQDDK 66
           +Y AQL +KV RL+ ++APF    P+VF SP+ ++R+RAEFR+W +G + ++ +F Q  K
Sbjct: 10  QYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTK 69

Query: 67  RTPILIEAFPIASTRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPL 126
            + I +++FP AS  INQLM  + A  + +  L HKLFQ+++LTTL+  A+++L YH+ L
Sbjct: 70  -SRIRVDSFPAASELINQLMTAMIAGVRNNPVLRHKLFQIDYLTTLSNQAVVSLLYHKKL 128

Query: 127 DEHWHTAARQL-----AADLNVSIIGRSKGKRDVIGHDYVVEKLDVGGRTFSYRQPEGAF 181
           D+ W   A  L     A +LNV +IGR+   +  +  DY+ E+L V G+   YRQ E +F
Sbjct: 129 DDEWRQEAEALRDALRAQNLNVHLIGRATKTKIELDQDYIDERLPVAGKEMIYRQVENSF 188

Query: 182 TQPNGTVNQKMLNWAYEALGDRPDDLLELYCGNGNFTLPLATRVRKVLATEISKTSVNAA 241
           TQPN  +N +ML WA +       DLLELYCGNGNF+L LA    +VLATEI+K SV AA
Sbjct: 189 TQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAA 248

Query: 242 LSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDPD 301
             N+  N +DNV ++R++AEE T+A+N VR F RL GIDLKSY+  ++FVDPPR+G+D +
Sbjct: 249 QYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLDSE 308

Query: 302 TCELTRRFDNILYISCNPETLAANIAQLHDTHKITQCAMFDQFPWTHHMESGVLLTRR 359
           T ++ + +  ILYISCNPETL  N+  L  THK+ + A+FDQFP+THHME GVLLT +
Sbjct: 309 TEKMVQAYPRILYISCNPETLCKNLETLSQTHKVERLALFDQFPYTHHMECGVLLTAK 366