Pairwise Alignments

Query, 359 a.a., tRNA (uracil-5-)-methyltransferase from Pseudomonas simiae WCS417

Subject, 433 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  100 bits (248), Expect = 9e-26
 Identities = 95/300 (31%), Positives = 139/300 (46%), Gaps = 40/300 (13%)

Query: 72  IEAFPIASTRINQLMPQLKAAWQASAALSHKLFQVEFLTTLAGDAMITLCYHRPLDEHWH 131
           ++  PI + ++  L+P+++A   +  A+ H L  VE +   +G  MI            H
Sbjct: 159 VKQCPILAPQLEALLPKVRACLGSLQAMRH-LGHVELVQATSGTLMILR----------H 207

Query: 132 TAARQLAADLNVSIIGRSKGKRDVIGHDYVVEKLDVGGR----------TFSYRQPEGAF 181
           TA    A    +     S+G    +  D  + +   G            TFS R     F
Sbjct: 208 TAPLSSADREKLERFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRD----F 263

Query: 182 TQPNGTVNQKMLNWAYEALGDRPDD-LLELYCGNGNFTLPLATRVRKVLATEISKTSVNA 240
            Q N  VNQKM+  A E L  +P+D +L+L+CG GNFTLPLAT+   V+  E     V  
Sbjct: 264 IQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEK 323

Query: 241 ALSNLDENAVDNVTLVRLSAEELTEALNEVRPFRRLHGIDLKSYEFGSVFVDPPRAGMDP 300
              N   N + NVT      E L E + + +P+ + +G D        V +DP RAG   
Sbjct: 324 GQQNARLNGLQNVTFYH---ENLEEDVTK-QPWAK-NGFD-------KVLLDPARAGAAG 371

Query: 301 DTCELTRRFD-NILYISCNPETLAANI-AQLHDTHKITQCAMFDQFPWTHHMESGVLLTR 358
              ++ +     I+Y+SCNP TLA +  A L   + I + AM D FP T H+ES VL +R
Sbjct: 372 VMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSR 431