Pairwise Alignments

Query, 374 a.a., molecular chaperone DnaJ from Pseudomonas simiae WCS417

Subject, 314 a.a., DNA-binding protein from Pseudomonas simiae WCS417

 Score =  178 bits (451), Expect = 2e-49
 Identities = 119/358 (33%), Positives = 179/358 (50%), Gaps = 76/358 (21%)

Query: 4   RDYYEVLGVERGSSEADLKKAYRRLAMKHHPDRNPDNKESEEMFKEANEAYECLCDPNKR 63
           +DYY++LGVE  + + ++K AYR+LA K+HPD + + K++E  FK+A+EAYE L   +KR
Sbjct: 4   KDYYKILGVEPTADDKEIKAAYRKLARKYHPDVSKE-KDAEAKFKDASEAYEALKSADKR 62

Query: 64  AAYDQ---YGHAGVDPSMG----------GGGAGFGGQNFSDIFGDVF---SDFFGGGRG 107
           A YD+   YG  G  P  G          GGG G GG++FSD F  +F    D FGGG+ 
Sbjct: 63  AEYDELRKYGQHG-QPFQGPPGWQSRGGFGGGGGGGGEDFSDFFSSIFGSRGDAFGGGQ- 120

Query: 108 GQRGGAQRGSDLRYTLELNLEEAVRGTSVNIRVPTLVNCKPCDGSGAKKGSSPITCPTCG 167
            +R   ++G D+   L + LEE +   S  I                             
Sbjct: 121 -RRPAGRKGQDVEMQLSVFLEETLSTESKQIS---------------------------- 151

Query: 168 GIGQVRMQQGFFSVQQTCPRCHGQGKIISDPCDSCHGEGRVEEYKTLAVKVPAGVDTGDR 227
                      F V    P+    G+ +S+              K+L VK+PAGV  G+R
Sbjct: 152 -----------FQV----PQYDASGRHVSNTT------------KSLNVKIPAGVVNGER 184

Query: 228 IRLSGEGEAGTQGGPTGDLYVVINVREHSIFQRDGKHLFCEVPISFVDAALGGELEIPTL 287
           IRL G+G  G  GG  GDLY+++    H  F+ DG++L   +P++  + ALG E+ +PTL
Sbjct: 185 IRLKGQGAPGVGGGANGDLYLIVKFAPHPKFEVDGENLIINLPLAPWELALGAEVAVPTL 244

Query: 288 DGRVKLKIPEGTQTGKQFRIRGKGVAPVRGGGAGDLMCRVAVETPVNLNRRQRELLEE 345
            G++ LK+P G+Q G++ R +G G+   + G  G L  ++    P   N   + L +E
Sbjct: 245 TGKINLKVPAGSQNGQRMRAKGHGLLN-KAGQRGFLYVQLKAVMPPAGNDEVKALWQE 301