Pairwise Alignments

Query, 493 a.a., transcription elongation factor NusA from Pseudomonas simiae WCS417

Subject, 493 a.a., transcription termination/antitermination L factor from Pseudomonas putida KT2440

 Score =  901 bits (2328), Expect = 0.0
 Identities = 468/493 (94%), Positives = 479/493 (97%)

Query: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFR 60
           MSKEVLLVVESVSNEKGVP  VIFEALE+ALATATKKRFEDEVDLRVEINRHTG+YETFR
Sbjct: 1   MSKEVLLVVESVSNEKGVPPGVIFEALEVALATATKKRFEDEVDLRVEINRHTGSYETFR 60

Query: 61  RWTVVEEADLDDPAIETWPSKVAQTHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKV 120
           RWTVV+EADLDDPAIETW  K+  THP AKVGDV+EEKIESIEFGRIAAQTAKQVIVQKV
Sbjct: 61  RWTVVDEADLDDPAIETWLDKIKDTHPEAKVGDVIEEKIESIEFGRIAAQTAKQVIVQKV 120

Query: 121 REAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVR 180
           REAERAQVVDAYRER+GEIISGTVKKVTRDNVIVDLGNNAEALLAREDII RETFRVGVR
Sbjct: 121 REAERAQVVDAYRERVGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIIPRETFRVGVR 180

Query: 181 LRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240
           LRALLKEIRTENRGPQLILSRTAP+MLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV
Sbjct: 181 LRALLKEIRTENRGPQLILSRTAPQMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240

Query: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300
           RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV
Sbjct: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300

Query: 301 DEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRN 360
           DEDAHAMDIAV  DNLAQAIGRGGQNVRLASQLTGWTLNVMTE DIQAKQQAETGDILRN
Sbjct: 301 DEDAHAMDIAVAEDNLAQAIGRGGQNVRLASQLTGWTLNVMTEKDIQAKQQAETGDILRN 360

Query: 361 FIEELEVDEDLAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDTVNELRARAKDRLLTKA 420
           FIEELEVDE+LAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDED VNELRARAKDRLLTKA
Sbjct: 361 FIEELEVDEELAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDIVNELRARAKDRLLTKA 420

Query: 421 IATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDRA 480
           IATEEKLADAHPAEDLLSLEGMDKDLA ELAVRGV+ REDLAEQSIDDLLDIDGID++RA
Sbjct: 421 IATEEKLADAHPAEDLLSLEGMDKDLAAELAVRGVVNREDLAEQSIDDLLDIDGIDEERA 480

Query: 481 GKLIMAARAHWFE 493
           GKLIMAARAHWFE
Sbjct: 481 GKLIMAARAHWFE 493