Pairwise Alignments

Query, 493 a.a., transcription elongation factor NusA from Pseudomonas simiae WCS417

Subject, 496 a.a., transcription termination/antitermination protein NusA from Dickeya dianthicola ME23

 Score =  599 bits (1544), Expect = e-176
 Identities = 309/493 (62%), Positives = 381/493 (77%), Gaps = 3/493 (0%)

Query: 1   MSKEVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFR 60
           M+KE+L VVE+VSNEK VP   IFEALE ALATATKK++E E+D+RV I+R TG ++TFR
Sbjct: 1   MNKEILAVVEAVSNEKAVPREKIFEALETALATATKKKYEQEIDVRVCIDRKTGDFDTFR 60

Query: 61  RWTVVEEADLDDPAIETWPSKVAQTHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKV 120
           RW VV E  +  P  E          P   +G  +E++IES+ F RI  QTAKQVIVQKV
Sbjct: 61  RWLVVNE--VTQPTREITLEAAQFEEPSMDLGGYIEDQIESVTFDRITTQTAKQVIVQKV 118

Query: 121 REAERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVR 180
           REAERA VVD +RE+ GEI++G VKKV RDN+ +DLG+NAEA++ RED++ RE FR G R
Sbjct: 119 REAERAMVVDQFREQEGEIVTGVVKKVNRDNISLDLGSNAEAVIGREDMLPRENFRPGDR 178

Query: 181 LRALLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAV 240
           +R +L  +R E RG QL +SR+ PEMLIELFRIEVPEI E +IE+ AA+RDPGSRAKIAV
Sbjct: 179 IRGVLYAVRPEARGAQLFVSRSRPEMLIELFRIEVPEIGEEVIEIKAAARDPGSRAKIAV 238

Query: 241 RSKDKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIV 300
           ++ DKRIDP GAC+GMRG+RVQAVS ELGGER+DIVLWDDNPAQFVINAM+PA+VA+I+V
Sbjct: 239 KTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIVV 298

Query: 301 DEDAHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRN 360
           DED H MDIAV A NLAQAIGR GQNVRLASQL+GW LNVMT  D+QAK QAE    +  
Sbjct: 299 DEDKHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTIEDLQAKHQAEAHAAIDI 358

Query: 361 FIEELEVDEDLAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDTVNELRARAKDRLLTKA 420
           F + L++DE+ A  LV+EGF+SLEE+AYVP+ E+ +IDG DE+T+  LR RAK  L T A
Sbjct: 359 FTKHLDIDEEFATALVEEGFSSLEELAYVPIHELQDIDGLDEETIEALRERAKAALTTLA 418

Query: 421 IATEEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGIDDDRA 480
           +A EE      PAEDLL+L G+ ++LA +LA  GV T EDLAEQ +DDL DI+G+ +++A
Sbjct: 419 LANEENRGSGQPAEDLLNLSGLSRELAFKLAACGVCTLEDLAEQGVDDLADIEGLGEEQA 478

Query: 481 GKLIMAAR-AHWF 492
           G+LIMAAR   WF
Sbjct: 479 GELIMAARNICWF 491