Pairwise Alignments

Query, 493 a.a., transcription elongation factor NusA from Pseudomonas simiae WCS417

Subject, 523 a.a., Transcription termination/antitermination protein NusA from Azospirillum sp. SherDot2

 Score =  415 bits (1067), Expect = e-120
 Identities = 226/497 (45%), Positives = 326/497 (65%), Gaps = 10/497 (2%)

Query: 4   EVLLVVESVSNEKGVPANVIFEALELALATATKKRFEDEVDLRVEINRHTGAYETFRRWT 63
           E+L V ++V+ EK +  + + EA+E A+  A + ++  E D+R  I+R TG     R   
Sbjct: 2   ELLQVADAVAREKNIDRDEVLEAMEQAIQKAGRSKYGHEHDIRARIDRKTGDIHLTRHLE 61

Query: 64  VVEEADLDDPAIETWPSKVAQTHPGAKVGDVVEEKIESIEFGRIAAQTAKQVIVQKVREA 123
           VVE   +++ A +       +   GAK+GD + + +  I+FGRIAAQTAKQVIVQKVR+A
Sbjct: 62  VVET--VENEATQVTLPYAQKRKAGAKLGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDA 119

Query: 124 ERAQVVDAYRERLGEIISGTVKKVTRDNVIVDLGNNAEALLAREDIISRETFRVGVRLRA 183
           ER +  + Y++R GEI++G VK+V   NV VDLG  AEA+L R++++ RE F+ G R+RA
Sbjct: 120 ERKRQFNEYKDRNGEIVNGLVKRVEYGNVTVDLGR-AEAILRRDELLPREHFKNGDRVRA 178

Query: 184 LLKEIRTENRGPQLILSRTAPEMLIELFRIEVPEIAEGLIEVMAASRDPGSRAKIAVRSK 243
            + ++R E RGPQ+ LSRT P  + +LF  EVPEI +G+IE+ A +RDPGSRAKIAV S 
Sbjct: 179 YIFDVREEPRGPQIFLSRTHPMFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIAVLSH 238

Query: 244 DKRIDPQGACIGMRGSRVQAVSGELGGERVDIVLWDDNPAQFVINAMSPAEVAAIIVDED 303
           D  IDP GAC+GMRGSRVQAV GEL GE++DI+ W+     FV+NA++PAEVA +++D+D
Sbjct: 239 DSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNGEAPTFVVNALAPAEVAKVVLDDD 298

Query: 304 AHAMDIAVGADNLAQAIGRGGQNVRLASQLTGWTLNVMTESDIQAKQQAETGDILRNFIE 363
            H +++ V  D L+ AIGR GQNVRLAS LTGW ++++TE +   ++  E  +    F++
Sbjct: 299 NHRIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESERRSEEIHNRSALFMQ 358

Query: 364 ELEVDEDLAQVLVDEGFTSLEEIAYVPLEEMLNIDGFDEDTVNELRARAKDRLLTKAIAT 423
            L+VD+ +A +LV EGFTS+EEIAYV  EE+  I+GFDE   +EL+ RA   L  +    
Sbjct: 359 ALDVDDVIAHLLVAEGFTSVEEIAYVETEELAEIEGFDESVADELKQRALAFLEVRDEQA 418

Query: 424 EEKLADAHPAEDLLSLEGMDKDLAMELAVRGVITREDLAEQSIDDLLDIDGID------- 476
            E+  +    + +  L G      ++L   GV T +DLA+ + D+L++I G D       
Sbjct: 419 NERRLELGVEDIIAELTGFSATQLVKLGENGVKTLDDLADLAGDELVEILGKDGAKDAPS 478

Query: 477 DDRAGKLIMAARAHWFE 493
           ++ A  +IMAARAHWFE
Sbjct: 479 EEEANAIIMAARAHWFE 495