Pairwise Alignments

Query, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

Subject, 805 a.a., DNA gyrase subunit B from Pseudomonas simiae WCS417

 Score =  376 bits (965), Expect = e-108
 Identities = 220/553 (39%), Positives = 325/553 (58%), Gaps = 21/553 (3%)

Query: 7   SSYNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHAKSVHVI 62
           ++Y++ +I+VL GLD VRKRPGMY     D S  +H+  EV+DNS+DEALAGH   + +I
Sbjct: 5   NTYDSTSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVFEVVDNSIDEALAGHCDDISII 64

Query: 63  LHADHSLEVSDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISV 122
           +H D S+ V D+GRG+PVD+H EEGV   E+I+T LHAGGKF + +Y+ SGGLHGVG+SV
Sbjct: 65  IHPDESITVRDNGRGIPVDVHKEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSV 124

Query: 123 VNALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIGTVGKRNTGTSVYFAPDPKYFDSPK 182
           VNALS  + + V+R G  ++ T+  G     ++++G      TGT ++F P  + F +  
Sbjct: 125 VNALSEELILTVRRSGKIWEQTYVHGVPKEPMKIVG--DSETTGTQIHFKPSAETFKNIH 182

Query: 183 FSISRLKHVLKAKAVLCPGLVVTFEDKGTGEKVEWHYEDGLRSYLEDSVSDFERLPNEPF 242
           FS   L   ++  + L  G+ +  +D+ +G++  + YE GLR+++E  ++  +   N+ F
Sbjct: 183 FSWDILAKRIRELSFLNSGVGIVLKDERSGKEELFKYEGGLRAFVE-YLNTNKTAVNQVF 241

Query: 243 CGSLAGNKE-AVDWALLWLPEGGDSVQES---YVNLIPTAQGGTHVNGLRQGLLDAMREF 298
             ++       V+ AL W     DS  E+   + N IP   GGTH+ G R  L   +  +
Sbjct: 242 HFNIQREDGIGVEIALQW----NDSFNENLLCFTNNIPQRDGGTHLVGFRSALTRNLNTY 297

Query: 299 CEYRNLLPR-GVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVVKDA 357
            E   L  +  V    +D  E +  ++S+K+ +P+FS QTK++L S E    V   +   
Sbjct: 298 IEAEGLAKKHKVATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKY 357

Query: 358 FSLWLNEHPELGLALAELAINNAGRR---LKASKKVERKRITQGPALPGKLADCAGQDPM 414
           FS +L E+P     +    I+ A  R    KA +   RK       LPGKLADC  +DP 
Sbjct: 358 FSDFLLENPNEAKLVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPA 417

Query: 415 RSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAVAIGV 474
            SEL+LVEGDSAGGSAKQ R++  QAILPL+GKILN  +    ++++SQEV  +  A+G 
Sbjct: 418 LSELYLVEGDSAGGSAKQGRNRRTQAILPLKGKILNVEKARFDKMISSQEVGTLITALGC 477

Query: 475 DPGAAD--MSQLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPPLYR 532
             G  +  + +LRY  I I+ DAD DG HI TLL   F +    L+E G++Y+A PPLY+
Sbjct: 478 GIGRDEYNIDKLRYHNIIIMTDADVDGSHIRTLLLTFFFRQLPELIERGYIYIAQPPLYK 537

Query: 533 IDLGKEIYYALDE 545
           +  GK+  Y  D+
Sbjct: 538 VKKGKQEQYIKDD 550



 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 32/75 (42%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 552 LDRLVAEKKRGKPQVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTLGDDFAATSEMMDML 611
           LD L+AE  + +  + R+KGLGEMNP QL ETTMDP  RR++++T+ D   A  ++ + L
Sbjct: 724 LDWLMAESTK-RHTIQRYKGLGEMNPDQLWETTMDPAQRRMLRVTIEDAIGA-DQIFNTL 781

Query: 612 LAKKRAPDRKSWLES 626
           +     P R+ ++ES
Sbjct: 782 MGDAVEP-RRDFIES 795