Pairwise Alignments

Query, 635 a.a., DNA topoisomerase IV subunit B from Pseudomonas simiae WCS417

Subject, 808 a.a., DNA topoisomerase (ATP-hydrolyzing) subunit B from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  407 bits (1046), Expect = e-117
 Identities = 240/563 (42%), Positives = 320/563 (56%), Gaps = 21/563 (3%)

Query: 9   YNADAIEVLSGLDPVRKRPGMYT----DTSRPNHLAQEVIDNSVDEALAGHAKSVHVILH 64
           Y AD+I+VL GLD VRKRPGMY     D S  +H+  EV+DN++DEALAGHA  V VIL+
Sbjct: 11  YGADSIKVLKGLDAVRKRPGMYIGDTDDGSGLHHMVYEVVDNAIDEALAGHADLVQVILN 70

Query: 65  ADHSLEVSDDGRGMPVDIHPEEGVPGVELILTKLHAGGKFSNKNYQFSGGLHGVGISVVN 124
           +D S+ V+D+GRG+P  IH  EGV   E+I+T+LHAGGKF   +Y+ SGGLHGVG+SVVN
Sbjct: 71  SDGSVTVTDNGRGIPTGIHEGEGVSAAEVIMTQLHAGGKFDQNSYKVSGGLHGVGVSVVN 130

Query: 125 ALSTLVRVKVKRDGNEYQMTFADGYKATDLEVIG------TVGKRNTGTSVYFAPDPKYF 178
           ALS  + +K+ RDG  +QM F  G     LEV G        GK  +GT V F P    F
Sbjct: 131 ALSDWLELKIYRDGKAHQMRFERGDTVKSLEVTGDAPIREDTGKPLSGTEVTFFPSVTTF 190

Query: 179 DSPKFSISRLKHVLKAKAVLCPGLVVTFEDKGTGEKVEW--HYEDGLRSYLEDSVSDFER 236
               F +  L+H L+  A L  G+V+   D+   E VE   HYE G+ +++     D  +
Sbjct: 191 SHIDFDLKTLEHRLRELAFLNSGVVIKLADQRHAEPVEMILHYEGGVEAFVRH--LDKSK 248

Query: 237 LPNEPFCGSLAGNKEAVDWAL-LWLPEGGDSVQESYVNLIPTAQGGTHVNGLRQGLLDAM 295
            P       + G KE ++  L LW  +        + N IP   GGTH++  R  L   M
Sbjct: 249 TPILKDVIVIRGKKEGIELDLALWWNDSYHETMLCFTNNIPQRDGGTHLSAFRASLTRVM 308

Query: 296 REFCEYRNL-LPRGVKLAPEDVWERIAFVLSMKMQEPQFSGQTKERLSSREAAAFVSGVV 354
             + E         V +  ED  E +  VLS+K+ +P+FS QTK++L S E    V  + 
Sbjct: 309 GGYIESSGAGKKEKVSVTGEDAREGLTCVLSVKVPDPKFSSQTKDKLVSSEVRPAVESLC 368

Query: 355 KDAFSLWLNEHPELGLALAELAINNAGRR---LKASKKVERKRITQGPALPGKLADCAGQ 411
            +  + W  EHP     +    I  A  R    KA     RK   +  +LPGKLADC  +
Sbjct: 369 SEGLATWFEEHPVEAKQIVAKIIEAASAREAARKARDLTRRKSALEISSLPGKLADCQER 428

Query: 412 DPMRSELFLVEGDSAGGSAKQARDKEFQAILPLRGKILNTWEVDGSEVLASQEVHNIAVA 471
           DP +SELF+VEGDSAGGSAKQAR++E QA+LPLRGKILN        +L+S  +  + +A
Sbjct: 429 DPAKSELFIVEGDSAGGSAKQARNRENQAVLPLRGKILNVERARFDRMLSSDLIGTLILA 488

Query: 472 IGVDPGAADMS--QLRYGKICILADADSDGLHIATLLCALFVQHFRPLVEAGHVYVAMPP 529
           +G   G  D +  +LRY KI ++ADAD DG HI TLL   F +    L+  GHVY+A PP
Sbjct: 489 LGTGIGRDDFNADKLRYHKIILMADADVDGAHIRTLLLTFFYRQMPELITRGHVYIAQPP 548

Query: 530 LYRIDLGKEIYYALDEAERDGIL 552
           LY++  GK+  Y  D+AE D  L
Sbjct: 549 LYKVSKGKQSRYLKDQAEMDAYL 571



 Score = 48.1 bits (113), Expect = 1e-09
 Identities = 26/50 (52%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query: 550 GILDRLVAEKKRGKP--QVTRFKGLGEMNPPQLRETTMDPNTRRLVQLTL 597
           G LD L A    GK    + R+KGLGEMNP QL ETT+D N R L+Q+++
Sbjct: 723 GPLDLLTAVLDAGKKGLSIQRYKGLGEMNPEQLWETTLDVNARTLLQVSV 772