Pairwise Alignments

Query, 475 a.a., Fis family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 475 a.a., Sigma-54 dependent transcriptional regulator/response regulator from Pseudomonas putida KT2440

 Score =  305 bits (780), Expect = 3e-87
 Identities = 187/477 (39%), Positives = 271/477 (56%), Gaps = 26/477 (5%)

Query: 4   ILIVEDETIIRSALRRLLERNQYQVSEAGSVQEAQERFSIPTFDLIVSDLRLPGAPGTEL 63
           IL+VED+ I+   +R  L    Y+V    S + A E+      D +++D  LPG  G +L
Sbjct: 5   ILVVEDDEILADNIRTYLSLKGYEVIVCHSAELALEQIKRAQPDAVLTDNSLPGMSGHDL 64

Query: 64  IKL----GQGTPVLIMTSYASLRSAVDSMKMGAVDYIAKPFDHDEMLQAVARILRDRQSP 119
           ++          V++MT Y ++  AV +MK GA  Y+ KP    E+   + + L   +  
Sbjct: 65  LRTLVAQAPDLKVIMMTGYGNVEDAVQAMKEGAFHYLTKPVVLAELKLTLDKALATERME 124

Query: 120 SSAPAEQRPAGKAADKPGVDNSNGEIGIIGSCPPMQDLYGKIRKVAPTDSN--------V 171
            +    Q    + A K G+        +IG  P M  L   +R+V   +          V
Sbjct: 125 RTLSFYQE---REAQKSGLQ------ALIGESPVMLTLKHTLRQVLDAERRMASDDLPPV 175

Query: 172 LIQGESGTGKELVARALHNLSKRAKAPMISVNCAAIPESLIESELFGHEKGAFTGASAGR 231
           LI+GE+GTGKELVARALH    R+K P I  NCA+IP +L+E+ELFGHEKGAFT A   R
Sbjct: 176 LIEGETGTGKELVARALHFDGSRSKGPFIEFNCASIPANLLEAELFGHEKGAFTDAKERR 235

Query: 232 AGLVEAADGGTLFLDEIGELPLEAQARLLRVLQEGEIRRVGSVQSQKVDVRLIAATHRDL 291
            GLVEAADGGTLFLDEIGE+ L  QA+LL++L++  IRR+G+V+ +KVD+R+I+AT+ +L
Sbjct: 236 VGLVEAADGGTLFLDEIGEMDLVLQAKLLKLLEDRSIRRIGAVKERKVDLRVISATNCNL 295

Query: 292 KSLAKIGQFREDLYYRLHVIALKLPALRERGADVNEIAHAFLLRQSARINRTDLKFAPDA 351
           + + + G+FR DL++RL +IALK+P L  RG D+  +A  FL   S R  + +L+F+ +A
Sbjct: 296 EQMVQQGKFRRDLFFRLRIIALKVPRLYSRGQDILLLARHFLAHHSRRYGKPNLRFSAEA 355

Query: 352 EQAIRHYSWPGNVRELENAVERAVILSESPEISAELLGIDIELSDLEDDDFIGLAPSQGG 411
           E  +  YSWPGNVREL N +E+ V+L+ +  + A  L +      L D+       +   
Sbjct: 356 ESLLLGYSWPGNVRELRNMLEQTVLLAPNEVVQAHQLNL---CMTLVDEPLAQQPMAAMF 412

Query: 412 SNTSHEPTEDLSLEDYFQHFVLEHQDH--MTETELARKLGVSRKCLWERRQRLGIPR 466
               HEP    SL D  +  V +  D      T+ AR LG+SR  L  R ++LG+ R
Sbjct: 413 EMPRHEPEPGTSLPDMERDLVCKTLDRTDWNVTKSARMLGLSRDMLRYRIEKLGLTR 469