Pairwise Alignments

Query, 1224 a.a., exodeoxyribonuclease V subunit beta from Pseudomonas simiae WCS417

Subject, 1172 a.a., RecBCD enzyme subunit RecB from Xanthobacter sp. DMC5

 Score =  121 bits (304), Expect = 3e-31
 Identities = 237/913 (25%), Positives = 365/913 (39%), Gaps = 163/913 (17%)

Query: 15  SQLIEASAGTGKTFTISALYLRLVLGHGGDESSFGRELLPPQILVVTFTDAATKELRERI 74
           S  + A+AG+GKT  ++   +RL+L              P +IL +T+T AA   +  R+
Sbjct: 27  SAWVSANAGSGKTHVLARRVIRLLLAGTP----------PGRILCLTYTKAAAANMANRV 76

Query: 75  RIRLAEAARFFREEIEQPDALIADLRADYLPEQWPACANRLDIAA-QWMDEAAVSTIHSW 133
              LA   R+ R +    DA IA+   +   +   A A RL  AA +      + TIH++
Sbjct: 77  ---LAILGRWARMDDAVLDAAIAETVGEAPDDALRARARRLFAAALETPGGLKIQTIHAF 133

Query: 134 CQRMLREHAF--DSGSLFTQTLETDHSDLLGEVLRDYW---RLFCYPMHDDALNWVRSHW 188
           C  +L    F  D  + F +  E    +L+  +  D      L       +AL  +    
Sbjct: 134 CGGLLHRFPFEADVAAGFRELDEVARRELMARIRADLVVAASLAPASPAGEALARLTEEM 193

Query: 189 G--GPAALMPRVRALFGSERPTDETRE------------PAELITACLQERREALTTLKA 234
              G   L+    AL     P  +T              PA L    ++   E L +   
Sbjct: 194 SDSGLTGLIEAAVALRTRISPLGDTPAARRAAVARALGLPAGLTVTDVEA--EMLASPHL 251

Query: 235 PWQQW------------ATELRDICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADETL 282
           P  +W            AT+ +     A AA A D     A Y   +F       +D+ L
Sbjct: 252 PRSEWESVAATLATSDKATDRKRADDLAAAAAAGDDASALAAYRGVFFGSDGP-RSDKNL 310

Query: 283 EQLDIGTGFTRLTPDGMAEAWKGEPPQHPGIDAMAGLKAALDALPTPDAAVLQHAAGWVG 342
               +GT      PD +A  +  E  +  G+D    LKAA     T  A  L   A    
Sbjct: 311 LTKGMGTR----EPDLLAR-FTAERDRLAGLDDR--LKAAWTLERTGAALTLGAEAC--- 360

Query: 343 KRFEEEKRRRAEMGFDDMLIRLNAALQADGGERLASVVREQFPVALIDEFQDTDPVQYSI 402
           +R+E EK  R  + FDD++ +  AAL A+    +   + +     L+DE QDT P Q+ +
Sbjct: 361 RRYEAEKAARGLLDFDDLITKA-AALLAEQPTFVQFKLDQGIDHILVDEAQDTSPEQWKV 419

Query: 403 FDSIYRIEENHLDSG----------LFLIGDPKQAIYAFRGADIY-------TYLRARQS 445
            + +     +   SG          +F++GD KQ+I++F+GAD         T+ R   +
Sbjct: 420 VEGL----TSDFFSGEGARAGVTRTIFVVGDEKQSIFSFQGADPRAFGAMRSTFERKVGA 475

Query: 446 TTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGAFLFREPDGVNPVPFHSVLSQGRKEQ 505
              R   L  +FRS+  ++EAV+ +F+      G  L    DGV PV  H+ +       
Sbjct: 476 EGFRRVELPHSFRSAPGVLEAVDAIFKSEVAHAGLTL----DGVGPV--HAAIRADAPAL 529

Query: 506 LQVDGQTLPAMN---------LWHLPTDQPVSNVIYRQQLAAACATHIVELLNGGQQGSA 556
           +++   T+P  +         L  +P+D PVS      +LAA  A  I       Q G A
Sbjct: 530 VEIWPTTVPEPHPEPDNWRRPLDEVPSDDPVS------RLAARIAGFI-------QAGIA 576

Query: 557 -GFLQPDGSFKGVRPSDIAILVRD-GKEAQAVRGELAARGVRSVYLSDKDSVFAAQE--A 612
            G   P  + + +R  D+ +LVR  G+  +AV   L       V ++  D +   +   A
Sbjct: 577 NGLAIPSRNGRPMRAGDVLVLVRRRGRVFEAVIRALKELKDPRVQVAGADRLVVPEHIAA 636

Query: 613 HDLLAWLKACAEPDVERPLRAALACVTLNLSLAELERL-------------NQDELAWES 659
            DL+A   A   P  +  L + L       +  +L  L               D+    +
Sbjct: 637 LDLMALGDALLSPHDDLSLASVLKSPLFGFTDDDLMALCPQRKGTLASVLATSDDTRHRA 696

Query: 660 RVMQFRGYRTIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASE 719
              +  G++     +G+ P        F     ++ R  G R +     L+ L  +AA  
Sbjct: 697 AAARLAGWKG--EAEGLRP--------FDFYGRVLGRDGGRRAM-----LARLGPEAADV 741

Query: 720 LDGEQALIR--------HLAEHLALSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLV 771
           LD   AL R         LA  LA   + G E    +ES    V+V+T H +KGLE  LV
Sbjct: 742 LDEFMALARTYEGAEPASLAGFLAFLRRGGAETKRDMESGRDEVRVMTAHGAKGLEAPLV 801

Query: 772 FL-PFICSAKP-VDGSRLPLHYHDENGKSHVSLRP----TPELIAQADNERLAEDL---- 821
            L   +   +P + G  L L      G+    L P     PE++A A     A +L    
Sbjct: 802 ILADTVDMPRPRIAGGLLTL-----PGEGVPVLAPRKAEDPEVLAAARATAAARELEEYR 856

Query: 822 RLFYVALTRAKHA 834
           RLFYVALTRA+ A
Sbjct: 857 RLFYVALTRAEDA 869