Pairwise Alignments

Query, 326 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

Subject, 318 a.a., Carnitine catabolism transcriptional activator from Alteromonas macleodii MIT1002

 Score = 48.1 bits (113), Expect = 3e-10
 Identities = 30/102 (29%), Positives = 57/102 (55%), Gaps = 2/102 (1%)

Query: 219 LIRARQYIHDNAREAVHLEDLEAAAGVSRFKLFDAFRKYFALSPMAYLKKHRLSAVRQEI 278
           +++A+ Y+ ++  + + L DL +   VS+  L   F +   +S + YL+K RL    Q+I
Sbjct: 215 VVKAQNYLANHYSQPISLSDLASHTFVSQRTLQRRFTQALGMSVIDYLQKLRLHHACQQI 274

Query: 279 LEHGSTRTISEIALGWGFTHLGRFSAEYRKLFDESPSQTQQR 320
               STR+I++IA   G+ ++  F   +RK +  SP + ++R
Sbjct: 275 --EVSTRSIADIAFNVGYQNVNAFRKIFRKEYGLSPVEYRKR 314



 Score = 24.6 bits (52), Expect = 0.003
 Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 12/100 (12%)

Query: 178 YEQPAFTRDLESSLIKGLILAQPNNYSEELRDMLGVKLPHYLIRAR-----QYIHDNARE 232
           Y QP    DL S                     LG+ +  YL + R     Q I  + R 
Sbjct: 226 YSQPISLSDLASHTF-----VSQRTLQRRFTQALGMSVIDYLQKLRLHHACQQIEVSTRS 280

Query: 233 AVHLEDLEAAAGVSRFKLFDAFRKYFALSPMAYLKKHRLS 272
              +        V+ F+    FRK + LSP+ Y K+  ++
Sbjct: 281 IADIAFNVGYQNVNAFRKI--FRKEYGLSPVEYRKRFAIN 318