Pairwise Alignments

Query, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

Subject, 475 a.a., Type I secretion system, outer membrane component LapE from Variovorax sp. SCN45

 Score = 79.3 bits (194), Expect = 3e-19
 Identities = 107/428 (25%), Positives = 175/428 (40%), Gaps = 49/428 (11%)

Query: 4   KLSLALAVSCATN------GMVWAAEAPLSANTDLVSVYQEAVDNNADLAAARAQYGAQK 57
           KLS  LA S          G+     A  +   +L    ++AV  +  ++ A A    Q 
Sbjct: 32  KLSRRLAPSALAKELGIQPGLALPEAAETTTPLELTDAVRQAVARHPSISDAIAMLAQQS 91

Query: 58  EVVPQARAGLLP--NLTGGADINNVRTQIDTPAATANRDAHSWRATLSQPLF---RADRW 112
             V  ARAG  P   +  GA +N         A           A++SQ L+   +    
Sbjct: 92  GGVDVARAGYYPLVRVGMGAGVNG-----GASATQGGGKRGVATASVSQMLYDFGKVSGA 146

Query: 113 FQLQAAEATNEQAAL--QLSATEQNLILQSAENYFAVLRAQDNLASTKAEENAFKRQLDQ 170
                A+   +QA +  Q+ A  Q    Q+AE      R Q  +A  + +  A ++ L+ 
Sbjct: 147 VGQSEAQVQRQQATVLKQIDAIAQ----QAAEAVVMTHRYQSLVAIAQEQVQAVEKVLET 202

Query: 171 SNERFDVGLSDKTDVLQSQASYDTARANRILAQRQVEDAFEALITLTNRQYNSIQGIVHT 230
           +  R D GLS K D +Q+++  D+ARAN +  + Q+    E L TL  R           
Sbjct: 203 ARLRADAGLSTKADPIQAESRVDSARANLLQVKSQLAQWRERLGTLLGRS---------V 253

Query: 231 LPVLPPLPNDAKAWVETAGRQNLNL----LASNYAVTAAEETLKQRKAGHAPTLDAVAQY 286
            P + PLP    + +    + + +L    LA+     AA   L+  KA   PT+   A  
Sbjct: 254 PPRMAPLPEHLASELRIDLQPDTSLMPEVLAAEAERRAATAQLEVAKAQRYPTISLDASV 313

Query: 287 EKGDNDALGFSNPNAFGTPYRGDVEQRTIGLRLSIPIYSGGLTSSQVRESYSRLGQTEQQ 346
               N  +G  N    G P R      ++ L LS  +Y GG   +QV  + +       +
Sbjct: 314 ----NRPMGGMNS---GVPERSG-GSHSVMLNLSSVLYQGGALEAQVNTAIAAEQAARMR 365

Query: 347 REGLRRQVVENTRNLHRAV---NTDVEQVQARRQSIISNQSAVEATEIGYQVGTRNIVDV 403
            E  R    +  RN    V      +  +  RR+SI+    A +     Y +GTR+I+D+
Sbjct: 366 IETARLNAGDQVRNFREQVIGAQARLGVLADRRRSIV---EARDLYREQYTLGTRSILDL 422

Query: 404 LDSQRQLY 411
           L+++++++
Sbjct: 423 LNAEQEIH 430