Pairwise Alignments

Query, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

Subject, 452 a.a., putative Outer membrane efflux protein from Pseudomonas putida KT2440

 Score =  158 bits (399), Expect = 4e-43
 Identities = 112/410 (27%), Positives = 199/410 (48%), Gaps = 20/410 (4%)

Query: 47  AAARAQYGAQKEVVPQARAGLLPNLTGGADINNVRTQIDTPAATANRDAHSWRAT--LSQ 104
           A    Q G +   + +A  GLLP +   A  N V           + D  S  A   L Q
Sbjct: 49  AVHEKQAGGENRAIGEA--GLLPQINASAYFNQVNGSQRQNGQDNDLDYDSKGANVRLRQ 106

Query: 105 PLFRADRWFQLQAAEATNEQAALQLSATEQNLILQSAENYFAVLRAQDNLASTKAEENAF 164
           PLF   +  + +  +   + +     A  Q+  ++ A+ YF VL A + +   KA+ +AF
Sbjct: 107 PLFNKQKMAEYRQGQQRADYSVAVFDAKSQDAAVRLADAYFDVLLASETITLAKAKLSAF 166

Query: 165 KRQLDQSNERFDVGLSDKTDVLQSQASYDTARANRILAQRQVEDA---FEALITLTNRQY 221
           + QL  +  R ++G    TDV +S A  D A A+ I AQ  + +A    E  I  T +  
Sbjct: 167 EEQLASAKRRMELGAGTITDVDESVARRDLAEADLIDAQDNLVNARRKLEEYIGETPQAL 226

Query: 222 NSIQGIVHTLPVLPPLPNDAKAWVETAGRQNLNLLASNYAVTAAEETLKQRKAGHAPTLD 281
            ++Q    T P++P    + + W+  A   +  + A  ++   AEE + + ++GH PTLD
Sbjct: 227 TTLQAGFSTPPLMP---GNLQEWLVKAQADSPLIHARRHSYALAEEEVNRARSGHYPTLD 283

Query: 282 AVAQYEKGDNDALGFSNPNAFGTPYRGDVEQRTIGLRLSIPIYSGGLTSSQVRESYSRLG 341
            VA Y  G + ++   N               +IGL L+IP+YSGG TS+  R++ +   
Sbjct: 284 FVAGYTAGSSQSISELNQRN---------HYSSIGLELNIPLYSGGSTSALSRQASANSS 334

Query: 342 QTEQQREGLRRQVVENTRNLHRAVNTDVEQVQARRQSIISNQSAVEATEIGY-QVGTRNI 400
           +   + +  R++V+ NT   +R V +   ++QA  +++ SN+ ++ +T  G+ + GT   
Sbjct: 335 KALDELDATRQEVISNTTREYRGVQSGALRIQALEKAVASNERSLTSTRKGFKEGGTSTN 394

Query: 401 VDVLDSQRQLYASVRNYNNSRYDYILDNLRLKQAAGTLNPGDLQDLARYL 450
            DVL+++  LY +  +   ++ +Y++  LRL  + G+L   D++ +  YL
Sbjct: 395 SDVLNAEELLYDARHDLFEAKLNYLMSRLRLASSVGSLGDDDIEQINDYL 444