Pairwise Alignments

Query, 479 a.a., channel protein TolC from Pseudomonas simiae WCS417

Subject, 471 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

 Score =  155 bits (392), Expect = 3e-42
 Identities = 124/442 (28%), Positives = 204/442 (46%), Gaps = 16/442 (3%)

Query: 14  ATNGMVWAAEAP--LSANT---DLVSVYQEAVDNNADLAAARAQYGAQKEVVPQARAGLL 68
           A  G   A E P  +SA+T   DL  +Y+EA   +  + AA A+  +  E    A   LL
Sbjct: 21  AMEGKDAAGEQPRGVSASTYVLDLAGLYREARLEDPRVLAAYARARSASEQQRAALGSLL 80

Query: 69  PNLTGGADINNVRTQIDTPAATANRDAHSWRATLSQPLFRADRWFQLQAAEATNEQAALQ 128
           P ++  A+ + +  + +      N + +S   +L+Q L+    W + Q +++  +Q   +
Sbjct: 81  PQVSANANSSRILRKNEAERDLYNTETYS--LSLTQYLYNKPAWERYQKSKSVKDQKGHE 138

Query: 129 LSATEQNLILQSAENYFAVLRAQDNLASTKAEENAFKRQLDQSNERFDVGLSDKTDVLQS 188
              T     +  A+ YF  L A D LA  +AE  A ++ LD+ +  F+  ++  TD L  
Sbjct: 139 AEDTLAEATVDLAKRYFVALAADDELALVQAERRATQKNLDRVSSMFERQMAKITDKLDM 198

Query: 189 QASYDTARANRILAQRQVEDAFEALITLTNRQYNSIQGIVHTLPVLPPLPNDAKAWVETA 248
           QA  D   A  + A+ QV+ + EAL  +  R        V     L       + WV  A
Sbjct: 199 QARVDFLLAQEVEARNQVQVSREALAEIVGRPITEPLSRVRNDVALQAPTRPLQNWVTQA 258

Query: 249 GRQNLNLLASNYAVTAAEETLKQRKAGHAPTLDAVAQYEKGDNDALGFSNPNAFGTPYRG 308
              N  L +      AA   +++ K  H P L      ++ D    G+ N  A     R 
Sbjct: 259 VENNPLLKSYQSGAEAANAAVREGKGEHYPQLSLSLSAQQNDQ---GYDNTQA----PRS 311

Query: 309 DVEQRTIGLRLSIPIYSGGLTSSQVRESYSRLGQTEQQREGLRRQVVENTRNLHRAVNTD 368
           D    + G++  IPIYSGG TS++VR  Y      E+Q EG+RRQVV+ T   +      
Sbjct: 312 DSYVASFGVK--IPIYSGGSTSARVRGLYDDQLAAEEQLEGVRRQVVKETTTAYLTAQAA 369

Query: 369 VEQVQARRQSIISNQSAVEATEIGYQVGTRNIVDVLDSQRQLYASVRNYNNSRYDYILDN 428
           VE+++A R ++ S Q +  A +  +  G  N VDVL + +  + + R+   ++YD+I + 
Sbjct: 370 VEKIRANRNALSSAQHSSVAAQKAFTFGVVNAVDVLTAVQNEFKARRDLLKTQYDFITNL 429

Query: 429 LRLKQAAGTLNPGDLQDLARYL 450
             L + AG LN   + ++  +L
Sbjct: 430 FLLNRWAGELNQESVDNVNVWL 451