Pairwise Alignments

Query, 507 a.a., transcriptional regulator from Pseudomonas simiae WCS417

Subject, 345 a.a., sigma-54 dependent transcriptional regulator from Erwinia tracheiphila SCR3

 Score =  233 bits (594), Expect = 8e-66
 Identities = 134/320 (41%), Positives = 196/320 (61%), Gaps = 14/320 (4%)

Query: 174 EIYREASGQQHKEMIGQSKPHKRLVEEIKLVGGSDLTVLITGETGVGKELVAQAIHAAST 233
           ++ R+ S +     +  S   K+L+   + +   ++ VLITGETG GKE VA+ IH  + 
Sbjct: 2   QVKRKISDRNEFYHVAHSSASKKLLSLARRLAKINVPVLITGETGTGKECVAKYIHHHAF 61

Query: 234 RADKPLISLNCAALPETLVESELFGHVRGAFTGALNERRGKFELANGGTLFLDEVGELSL 293
             D P I +NCAA+PE ++E+ LFG+ +GAFTGA++ + GKFELANGGTL LDE+G++ +
Sbjct: 62  SYDAPYIGVNCAAIPENMLEAILFGYEKGAFTGAISSQPGKFELANGGTLLLDEIGDMPI 121

Query: 294 TVQAKLLRVLQSGQLQRLGSDKEHQVDVRLIAATNRDLADEVRNGRYRADFYHRLSVYPL 353
            +QAKLLRVLQ  +++RLGS K   +++RLI ATN+DL  E+  GR+R D ++RLSV P+
Sbjct: 122 ALQAKLLRVLQEKRVERLGSHKSVPLNIRLITATNKDLNVEIAQGRFRQDLFYRLSVVPV 181

Query: 354 QVPALRERGRDVLLLAGFFLEQNRSRMGLGSLRLTSDAQAALLAYNWPGNVRELEHLIGR 413
            +  LRER  D+L L   F+E+ R+       RLT  A++ALLA++WPGNVRELE     
Sbjct: 182 PLTPLRERKEDILPLTELFIEKYRT-FSNNHPRLTPQARSALLAWDWPGNVRELE----- 235

Query: 414 SALKALGNCRERPKILSLNA-QDLDLPDVSAPLIEEQTGSAPVVTGDLRQATEQYQRQVI 472
                  N  +R  I+S N   D D   + AP  E  +    +    +RQ  +Q + Q I
Sbjct: 236 -------NAVQRGLIMSENGLLDADCFSLVAPKAEGISAPECIENNPVRQCGKQAEFQYI 288

Query: 473 SACLERHQHNWASAARELGL 492
           +  L+ H+ N +  A  LG+
Sbjct: 289 ADLLKYHEGNKSRTAASLGI 308