Pairwise Alignments

Query, 622 a.a., preprotein translocase subunit SecD from Pseudomonas simiae WCS417

Subject, 535 a.a., Protein translocase subunit SecD from Xanthobacter sp. DMC5

 Score =  302 bits (773), Expect = 3e-86
 Identities = 184/527 (34%), Positives = 297/527 (56%), Gaps = 53/527 (10%)

Query: 103 VVALNLAQTTPQWLRSIGAHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLR 162
           V++  +    P WL S     + LGLDL GG H LLEVD       R +    +V+ +LR
Sbjct: 27  VLSPGMLDHLPSWLAS---SRVTLGLDLQGGSHILLEVDGPALRRERTEQLRDEVRRVLR 83

Query: 163 KERLRYRSLPQLNGAIQLGFSDEASREQARALIRK------------NFNDFDIVPADLN 210
            +++ Y +L   + ++ L   D    ++A   +RK            +  + D+  +   
Sbjct: 84  DQKIGYSNLALRDTSVTLRLRDPNDTQKAVTELRKLAAPVTNALFGNSSGEMDLTVSS-G 142

Query: 211 GQAVLRLAMSPAKIAEIREYSIKQNLTTVRNRVNELGVAEPIVQRQGANRIVVELPGVQD 270
               + L ++ A +      ++ Q++  +R R+++LG  EP +QRQG +RI+V++PG+QD
Sbjct: 143 SDGTVTLQLTDAGLTAKMRSAVDQSIEIIRRRIDQLGTVEPNIQRQGLDRILVQVPGLQD 202

Query: 271 TAEAKRILGKTANLEFRLAAEPGAT------RATAEEFEFREGNRPPALIERGLIITGDQ 324
               K +LG+TA L FR+  +  +       RA  E    +  +  P L+E+ + ++G+ 
Sbjct: 203 PQRLKNLLGQTAKLSFRMVDQSMSPQQALEGRAPPESEVLKGQDGQPYLVEKQVRVSGED 262

Query: 325 VTDAKAGFGEHG-TPEVNIRLDGHGGELMSRATRSNVGRSMAVIFIEQRPITTYTKQMVN 383
           + DA+ GF ++   P V+ R + +G +  +  ++ +VGR  A++                
Sbjct: 263 LVDAQPGFDQNSREPIVSFRFNNNGAKRFAAVSQESVGRPFAIVL--------------- 307

Query: 384 GVEKDVPVQTFKEEKKIISLATIQSP-LGAQFRITGLNGQGESSELALLLRAGGLAAPMY 442
                        + ++IS   I+ P LG   +I+G     ++++LA+LLRAG L AP+ 
Sbjct: 308 -------------DNQVISAPVIREPILGGAGQISGSFTVQQANDLAILLRAGALPAPLK 354

Query: 443 FAEERTIGPSLGADNITKGVDAALWGMLFVSLFIIAIYRFFGVIATVALAGNMVMLLALM 502
             EERT+GPSLGAD+I  G  AA      V++F++A+Y  FG+ A +ALA +++++ +L 
Sbjct: 355 VVEERTVGPSLGADSIQAGKTAAYVAGGLVTVFMLAVYGLFGLFALIALAVHIILMFSLQ 414

Query: 503 SLLGATLTLPGIAGIVLTMGMAVDANVLIFSRIREEIAAGMTVQRAINEGFGRAFTAILD 562
           S+LGATLTLPGIAG+VLT+GMAVD+NV+IF R+R+E   G +   AI++GF  A   ILD
Sbjct: 415 SVLGATLTLPGIAGVVLTIGMAVDSNVVIFERMRDEAREGRSAISAIDKGFVNALGTILD 474

Query: 563 SNLTTLLVGGILFAM-GTGPVKGFAVTMSLGIFTSMFTAIMVTRAMV 608
           +N+T+L    ILF M G+GPV+GFAVT  LG+ T+MFTA  +TR M+
Sbjct: 475 ANITSLATAVILFLMGGSGPVRGFAVTYILGLLTTMFTAYTLTRLMI 521