Pairwise Alignments

Query, 622 a.a., preprotein translocase subunit SecD from Pseudomonas simiae WCS417

Subject, 615 a.a., SecYEG protein translocase auxillary subunit from Escherichia coli BL21

 Score =  550 bits (1418), Expect = e-161
 Identities = 307/632 (48%), Positives = 427/632 (67%), Gaps = 27/632 (4%)

Query: 1   MLNKYPLWKYVLILAVLAIGFIYSAPNLYPDDPAIQISGASTTLQVNQADLERASKALND 60
           MLN+YPLWKYV+++ V+ IG +Y+ PNL+ +DPA+QI+GA       Q  L +  K L +
Sbjct: 1   MLNRYPLWKYVMLIVVIVIGLLYALPNLFGEDPAVQITGARGVAASEQT-LIQVQKTLQE 59

Query: 61  AGIQVKAATLAAGAKGGLLRLTKQEDQLPAKDVVRKVMGDDYVVALNLAQTTPQWLRSIG 120
             I  K+  L  GA   L R    + QL A++ +  VMGD YVVALNLA  TP+WL +I 
Sbjct: 60  EKITAKSVALEEGAI--LARFDSTDTQLRAREALMGVMGDKYVVALNLAPATPRWLAAIH 117

Query: 121 AHPMKLGLDLSGGVHFLLEVDMDKALDARLKVYEGDVKSLLRKERLRYRSLPQLNG-AIQ 179
           A PMKLGLDL GGVHFL+EVDMD AL    +     ++S LR++ + Y ++ + N   + 
Sbjct: 118 AEPMKLGLDLRGGVHFLMEVDMDTALGKLQEQNIDSLRSDLREKGIPYTTVRKENNYGLS 177

Query: 180 LGFSDEASREQARALIRKNFNDFDIVPADLNGQAVLRLAMSPAKIAEIREYSIKQNLTTV 239
           + F D  +R++A A + K   D  I      G   LR  MS A+++E REY+++QN+  +
Sbjct: 178 ITFRDAKARDEAIAYLSKRHPDLVI---SSQGSNQLRAVMSDARLSEAREYAVQQNINIL 234

Query: 240 RNRVNELGVAEPIVQRQGANRIVVELPGVQDTAEAKRILGKTANLEFRL--------AAE 291
           RNRVN+LGVAEP+VQRQGA+RIVVELPG+QDTA AK ILG TA LEFRL        AA 
Sbjct: 235 RNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGATATLEFRLVNTNVDQAAAA 294

Query: 292 PGATRATAEEFEFREGNRPPALIERGLIITGDQVTDAKAGFGEHGTPEVNIRLDGHGGEL 351
            G     +E  + REG   P ++ + +I+TGD +TD+ +   E+  P+VNI LD  GG +
Sbjct: 295 SGRVPGDSEVKQTREGQ--PVVLYKRVILTGDHITDSTSSQDEYNQPQVNISLDSAGGNI 352

Query: 352 MSRATRSNVGRSMAVIFIEQRPITTYTKQMVNGVEKDVPVQTFKEEKKIISLATIQSPLG 411
           MS  T+ N+G+ MA +F+E +      K+  NG    V      +++++I++A IQS LG
Sbjct: 353 MSNFTKDNIGKPMATLFVEYKDSG---KKDANGRAVLV------KQEEVINIANIQSRLG 403

Query: 412 AQFRITGLNGQGESSELALLLRAGGLAAPMYFAEERTIGPSLGADNITKGVDAALWGMLF 471
             FRITG+N   E+ +L+LLLRAG L AP+   EERTIGP+LG  NI +G++A L G+L 
Sbjct: 404 NSFRITGINNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNIEQGLEACLAGLLV 463

Query: 472 VSLFIIAIYRFFGVIATVALAGNMVMLLALMSLL-GATLTLPGIAGIVLTMGMAVDANVL 530
             LF+I  Y+ FG+IAT AL  N+++++ +MSLL GATL++PGIAGIVLT+ +AVDANVL
Sbjct: 464 SILFMIIFYKKFGLIATSALIANLILIVGIMSLLPGATLSMPGIAGIVLTLAVAVDANVL 523

Query: 531 IFSRIREEIAAGMTVQRAINEGFGRAFTAILDSNLTTLLVGGILFAMGTGPVKGFAVTMS 590
           I  RI+EE++ G TVQ+AI+EG+  AF++I D+N+TTL+   IL+A+GTG +KGFA+T  
Sbjct: 524 INERIKEELSNGRTVQQAIDEGYRGAFSSIFDANITTLIKVIILYAVGTGAIKGFAITTG 583

Query: 591 LGIFTSMFTAIMVTRAMVNLIFGGRDFKKLWI 622
           +G+ TSMFTAI+ TRA+VNL++GG+  KKL I
Sbjct: 584 IGVATSMFTAIVGTRAIVNLLYGGKRVKKLSI 615