Pairwise Alignments

Query, 406 a.a., D-trehalose outer membrane porin (from data) from Pseudomonas simiae WCS417

Subject, 537 a.a., carbohydrate porin from Dickeya dianthicola ME23

 Score = 85.5 bits (210), Expect = 3e-21
 Identities = 123/438 (28%), Positives = 182/438 (41%), Gaps = 70/438 (15%)

Query: 20  AQALEFAGYLRSGAG-----TSTGSGPQQCFQLPGAQTKY--RLGNECEQYAELELRQDL 72
           A   EF GY RSG       TS+ +         G    Y  RLGNE + Y EL+L +  
Sbjct: 118 ADGFEFHGYARSGLAIHDSVTSSKANIGPGLTPAGETGGYVGRLGNEDDTYLELKL-EHR 176

Query: 73  LTLDDGSVLSVDAMASLYNKYDRALKFQGENNGSARMPQMYAQWSNLPSLNGG----SLW 128
             LD+G+      M +      R+      +     + + + +  +LP+  G     +LW
Sbjct: 177 TKLDNGATTRFKVMMA---DGQRSYNDWTASTSDLNVREAFVELGSLPTFTGAFKDTTLW 233

Query: 129 AGRRYYKRN-DIHISDFYYWNQSATGGGIEDVL-IGDLKYSYA--------ISRKDNLYQ 178
           AG+R+ + N DIH  D      + TGGGI DV  +   K + +        I+  DN  Q
Sbjct: 234 AGKRFDRDNFDIHWIDSDVVFLAGTGGGIYDVKPVDGWKTNLSLYGRSLGEITTLDNEIQ 293

Query: 179 KEYATRHDFNVAGFKTNPGGELELGLSYIEKAGGRD-------TNSG----WALTAQHVQ 227
               T ++F V  F+    G L    + I++  GR+       TN+G     AL A H  
Sbjct: 294 NYIVTSNNF-VGPFQFMLSG-LRARNNDIKENTGRNNADNVTNTNAGDNGYHALAAWHGD 351

Query: 228 KPFLG---GKNKFALQYGEGPG---TGLGYTGNTFLDKSSKSYRAVEFFDWQV--TPRFG 279
             F G   G +K AL YG G G     +G  GN  L +++ ++R   +    +  T  F 
Sbjct: 352 S-FYGLRDGTSKVALLYGHGLGGEVKSIGSDGN--LTQNANTWRLATYGTTALNKTWSFA 408

Query: 280 GQIEAVYQKDIRPGSQDQTWMSLGVRPAYAISEQFKLVTELGHDQVD-----------AT 328
             I A   KD      D  W +   R    I+E F L  E  +  ++            +
Sbjct: 409 PAILAQTSKDRYVQGDDYRWATFNARFIQEITENFALAYEGSYQYMNLEPQGYLSRNQVS 468

Query: 329 GGTRKLSKFTFAPTWSPKG-PEFWARPEVRLYYTYATWNKAAKRAANELAAGSALSDTGS 387
           GG  KL   TFAPT+         +RPE+R++ +Y  W+K     A++ A GS     G 
Sbjct: 469 GGFYKL---TFAPTFKVGDISNLLSRPELRVFASYMDWDKRLDNYASDDAFGSTGFKAGG 525

Query: 388 YGTARHGSNVGVQVEYWW 405
             T       GVQ+E W+
Sbjct: 526 EWT------FGVQMETWF 537