Pairwise Alignments

Query, 486 a.a., murein transglycosylase from Pseudomonas simiae WCS417

Subject, 258 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 67.4 bits (163), Expect = 5e-16
 Identities = 68/235 (28%), Positives = 108/235 (45%), Gaps = 13/235 (5%)

Query: 34  LERIKEDGVLRVVTRNSPATY-FQDRNGE-TGFEYELVKRFADDLGVKLEIETADNLDDL 91
           L  IK  G +R+ T    A + F D  G+ TG + EL +  A  +GVKLE++     + +
Sbjct: 25  LADIKAKGAIRIATTIDAAPWGFTDAAGKPTGLDVELAENVAKAMGVKLELQQVTGANRI 84

Query: 92  FGQLGKPNGPVLAAAGLVSSEQRQTQVRFSHPYLEVTPQIIYRNGQSRPTNAADLVGKKI 151
              L      V+AA G  SS +R  QV FS PY  V   +    G  +    +DL G+ +
Sbjct: 85  PYLLSNKVDVVIAALG--SSPERAKQVAFSKPYAAVYLGVYGGKGTPKFAKVSDLAGQTV 142

Query: 152 MVLKGSTHAEQLAELKKQNPAIEYEESDAVEVVDLLRMVDEGQIDLTLVDSNEVAMNQVY 211
            V KGST    L+EL      I  E++ +     L      GQ  L   ++N +A  +V 
Sbjct: 143 AVPKGSTPDLSLSELAPGAKLIRLEDTASTISAFL-----SGQAPL-FAENNFIA-QKVA 195

Query: 212 FPNVRVAFDLGNASNQSWAVAAGE--DNSLLNEINSYLDKVEKNGTLQRLKDRYY 264
             N     ++ +    S A  A +  + +LL E+N  +D    +G+L  L+ +++
Sbjct: 196 DENPAKGIEMKSLIRISPAYMAVQPSETALLAEMNKIIDAQAADGSLAALRLKWF 250