Pairwise Alignments

Query, 836 a.a., PTS N-acetyl-D-glucosamine transporter from Pseudomonas simiae WCS417

Subject, 838 a.a., D-trehalose PTS system, I, HPr, and IIA components (from data) from Pseudomonas simiae WCS417

 Score =  663 bits (1711), Expect = 0.0
 Identities = 387/834 (46%), Positives = 523/834 (62%), Gaps = 24/834 (2%)

Query: 8   LTLSAPLSGPVLTLGNVPDEVFASGAMGDGIAIDPLNDCLYAPCDGVIIHVARTGHALTI 67
           L L APLSG +L L  VPD VF+S  +GDG+ IDP +  L AP  GVI ++  +GHA++I
Sbjct: 7   LELLAPLSGVLLALDKVPDPVFSSRLIGDGLCIDPTSQTLCAPLAGVISNIQDSGHAVSI 66

Query: 68  RAENGAEVLMHVGIDTVELNGEGFALLVKDGARVSKGQALVQFDLDRIARQCKSLVSLII 127
             +NG +VLMH+G+DTV L G+GF  LV++G RV  GQ L++FD D +A   +SL++L++
Sbjct: 67  TDDNGVQVLMHIGLDTVNLAGQGFTRLVQEGQRVEAGQPLIEFDADYVALNARSLLTLML 126

Query: 128 LTNGERFELRAVAGQKVKVGEPLLQIVARSAAAVQTAVDNSEADVSASVRIT--HRGGLH 185
           + +GE F L  +A   V+ G+PLLQ+   S +    AVD  E D   S  +T  +  GLH
Sbjct: 127 VVSGEPFSL--LADGLVETGQPLLQL---SPSGAVEAVDEEEGDALFSKPLTLPNANGLH 181

Query: 186 ARPAALIRKTAQDFSSQAQLHFGDKSASCDSLIGLMGLGIGEGDEVRVTCRGKDAEAALQ 245
           ARPAA+  + A+ F++   LH   +SA+  SL+ +M L   +GD ++V+  G+DAEAA++
Sbjct: 182 ARPAAVFAQAAKGFNASIYLHKQTQSANAKSLVAIMALQTVQGDTLQVSAAGEDAEAAIK 241

Query: 246 ALVAALSAVIKEEHHVPVVAPPRRAHTEAGVLQGVCAAPGLVCGPLFRLTGIELP-ADVG 304
           ALVA L+    E   V  VA P    + A +L+GVCA+PG   G + ++T  EL   + G
Sbjct: 242 ALVALLAEGCGEA--VVNVAEPVATQSSATLLRGVCASPGSAFGQVVQVTDPELVITEQG 299

Query: 305 NHSADEQ--LQHLDTALEQVRSEIRSTLAHARQRKNVEEEDIFAAHLALLEDPNLLEAAT 362
              A E+  L     A  +    ++   A + Q       +IF AH  LLEDP LLE A 
Sbjct: 300 TGGATERAALTRGLLAANEALQVLQDKAAGSAQA------EIFRAHQELLEDPTLLEHAH 353

Query: 363 RSIEQGSAATHAWRDAIQAQCAVLLALGKPLFAERANDLRDLQQRVLRALLG---EAWHF 419
           R + +G +A  AW  A  A   +   LG  L AERA DL D+ QRVL+ +LG    AW  
Sbjct: 354 RLLGEGKSAAFAWNSATLATVTLFQGLGNALIAERAADLADVGQRVLKLILGIQDSAW-- 411

Query: 420 ELPAGSIVSAHELTPSDLLQLSAQHAVGICMAEGGATSHVAILARGKGLPCVVALGAEVL 479
           +LP  +I+ A +LTPS    L  +  +G     GGATSHVAILAR  GLP +  + A+VL
Sbjct: 412 DLPERAILIAEQLTPSQTASLDTRKVLGFVTVAGGATSHVAILARALGLPAICGVPAQVL 471

Query: 480 DVPQGQRVVLDAVNGRLELEPTEARHAEVHQIRDAQKLRRQQQQAQAQEPARTTDGVSIE 539
            +  G++V+LDA  G L LEP  A   ++   R  Q LR Q+  AQA  PA T DG  +E
Sbjct: 472 ALANGKQVLLDADKGELHLEPNLAEIEQLEAARKHQVLRHQRDVAQASLPATTRDGHHVE 531

Query: 540 VAANVASSAEAQVAFENGADGVGLLRTEFLFVDRRTAPDEQEQRHAYQAVLDAMG-DKSV 598
           V ANVAS  E + A   G +GVGLLR+EFL++DR  AP  +EQ   Y A+  A+G ++++
Sbjct: 532 VTANVASLQEVEHALTLGGEGVGLLRSEFLYLDRNRAPSPEEQAGTYTAIARALGTERNL 591

Query: 599 IIRTIDVGGDKQLDYLPLPVEANPVLGLRGIRMAQVRPELLDQQLRALLQVSPLERCRIL 658
           ++RT+DVGGDK L Y+P+  E NP LGLRGIR+   RP+LL +Q RA+L  +   R  I+
Sbjct: 592 VVRTLDVGGDKPLAYVPMDAETNPFLGLRGIRLCLERPQLLREQFRAILASAGFARLHIM 651

Query: 659 LPMVSEVDELLQIRQRLDELCVELELTQRPELGVMIEVPAAALMAEHLAKHADFLSIGTN 718
           LPMVS + EL   R+ L+E  + L LT+ P+LG+MIEVP+AALMA+  A H DF SIGTN
Sbjct: 652 LPMVSLLSELHLARKILEEEALALGLTELPKLGIMIEVPSAALMADVFAPHVDFFSIGTN 711

Query: 719 DLSQYTLAMDRDHAGLAARVDALHPALLRLIAQTCAGATKHGRWVGVCGALASDPLATPV 778
           DL+QYTLAMDRDH  LA + D+ HPA+LRLIA T   A  HG+WVGVCGALAS+ LA PV
Sbjct: 712 DLTQYTLAMDRDHPRLANQADSFHPAVLRLIATTVKAAHAHGKWVGVCGALASEALAVPV 771

Query: 779 LVGLGVSELSVSPPQIAEIKDRVRHLDAAQCRQLSQGLLDLSSAKAVRQACQHH 832
           L+GLGV ELSVS P I  IK  VR LD A C+ +++ +L L  A  VR+A + +
Sbjct: 772 LIGLGVDELSVSVPLIPTIKATVRELDLADCQIIARQVLGLEEAAEVREALRQY 825