Pairwise Alignments

Query, 298 a.a., tyrosine recombinase XerD from Pseudomonas simiae WCS417

Subject, 338 a.a., Site-specific tyrosine recombinase XerC from Variovorax sp. SCN45

 Score =  167 bits (422), Expect = 4e-46
 Identities = 107/305 (35%), Positives = 158/305 (51%), Gaps = 16/305 (5%)

Query: 9   IDRFLDALWLEKGLSDNTRQAYRSDLALFNGWLQEKNLELVNAGRELILDHLAWRLEQNY 68
           ++++L+ + +E+ L+  T + Y   L        E  L L +     I   +A       
Sbjct: 25  VEKYLEHVRVERRLAARTVELYAFHLKSLTDHAAEAKLSLDHVQTAHIRRWMAQLHAAGR 84

Query: 69  KPRSTARFLSGVRGFYRYLLREKLIAVDPTLQVDMPQLGRPLPKSLSEADVEAL--LAAP 126
           +PR  A  LS  R FYR+L  E L+  +P   V  P+ G+PLPK+L   D   L  L  P
Sbjct: 85  EPRGIALVLSCWRSFYRWLGHEGLVGFNPVQDVHAPKAGKPLPKALGVDDAVRLAELYDP 144

Query: 127 DLSEAIGQRDRAMLEVLYACGLRVTELISLTLEQ-------VNLRQGVLRVMGKGSKERL 179
           +       RD A++E+LY CGLRV+EL  L  +        V+L  G   V+GKGSK R+
Sbjct: 145 EADPWTEARDSAIVEMLYGCGLRVSELTGLDAQASSSARGWVDLDAGDANVLGKGSKRRI 204

Query: 180 VPMGEEAIVWVERYMRD-------ARSELLGGRPSDVLFPSLRGEQMTRQTFWHRIKHQA 232
           VPMG +A   V  ++         A S L   R +  LF S +G +M+ Q  W  ++ ++
Sbjct: 205 VPMGSKASEAVRDWLAVRGDCAALATSHLRDPRAAAALFISAKGVRMSSQAVWKLLRERS 264

Query: 233 KVAGIGKALSPHTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVARARLQDMHA 292
             AG+   + PH LRH+FA+H+L   +DLR VQ LLGH+ +STTQ+YT +    L  ++ 
Sbjct: 265 LKAGLAAPVHPHMLRHSFASHVLQSSSDLRAVQELLGHASISTTQVYTRLDFQHLAKVYD 324

Query: 293 KHHPR 297
             HPR
Sbjct: 325 AAHPR 329