Pairwise Alignments

Query, 569 a.a., ssDNA exonuclease RecJ from Pseudomonas simiae WCS417

Subject, 623 a.a., single-stranded-DNA-specific exonuclease RecJ from Rhodanobacter sp. FW510-T8

 Score =  508 bits (1308), Expect = e-148
 Identities = 284/604 (47%), Positives = 378/604 (62%), Gaps = 60/604 (9%)

Query: 20  PLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDAD 79
           P+L ++YAARGV    + +  LAR++  Q L G+  AVDLL  A+     ILI GD+D D
Sbjct: 24  PVLQQIYAARGVLEPGQAEHRLARMLSPQLLGGMAPAVDLLAEAIRDDWAILIAGDYDCD 83

Query: 80  GATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRAPQLLITVDNGISSV 139
           GAT + V   GLRLLGA  V Y +PNRF +GYGL+P  VA +LQ  PQL++TVDNG++S+
Sbjct: 84  GATGTAVAVRGLRLLGARRVSYAIPNRFAHGYGLSPAFVA-SLQPTPQLIVTVDNGVASI 142

Query: 140 EGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNPN----QPGCEFPS----------KAL 185
            GVAAAKA G++V+VTDHHLPG++LPA DA+VNPN    + G   P           K L
Sbjct: 143 AGVAAAKARGIRVIVTDHHLPGEQLPACDALVNPNVSLEKCGQGSPPLDSRVQDARMKNL 202

Query: 186 AGVGVIFYVLMALRARLRSLGWYDNTPQ--------------------PNIGELLDLVAL 225
           AGVGV+FY+L+ALRAR+R  GW+    +                    P++  LLDLVAL
Sbjct: 203 AGVGVMFYLLLALRARMRESGWFVQAGEHTKGRALVDTGDQDDRKSAVPDLSGLLDLVAL 262

Query: 226 GSVADVVPLDANNRILVHQGLERIRAGRARPGIKAILEVAKRDAARITSTDLGFILGPRL 285
           G+VAD+VPLD NNR+LV  GL+R+R+GRA  GI A++E  KR  A + STDL F +GPRL
Sbjct: 263 GTVADLVPLDFNNRVLVEAGLQRMRSGRACAGIAALVEAGKRSLATLCSTDLAFAVGPRL 322

Query: 286 NAAGRLDDMSLGIECLLTTDFAAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVES 345
           NAAGRL+DM LG+ECLLT D A AR  A QLD +N++R+ ++  M  EA      L   +
Sbjct: 323 NAAGRLEDMRLGVECLLTDDVAQARRHAEQLDAINRERRDLQASMVAEAEVLAAGL-AHT 381

Query: 346 MPYGLCLFDPEWHQGVIGILASRMKERYFRPTIAFADA-----GDGL------------- 387
              G+ L++P WH GV+G++A+++KER  RP IAFA A     GDG              
Sbjct: 382 DAVGVVLYEPSWHAGVVGLVAAKLKERLHRPVIAFAPASLEECGDGSPLLDLRAQDARTG 441

Query: 388 ---LKGSGRSVQGFHIRDALAVVASQHPNLITKYGGHAMAAGLTLPEENFPLFAEAFDAE 444
              L+GS RS+ GFHIRDALA + ++ P LI ++GGHAMAAGL+L   ++P FA AFDA 
Sbjct: 442 HAHLRGSARSIPGFHIRDALAAIDARQPGLIERFGGHAMAAGLSLKTGDYPRFAAAFDAI 501

Query: 445 VRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHFPEPLFHGVFQLVEQRVV 504
            R  +  E L   L +DG L      L LAR LR AGPWGQ FPEPLF  +F+    +V+
Sbjct: 502 ARELIEPERLQAVLYTDGELPPGAATLALARQLRAAGPWGQAFPEPLFDNLFECAGWKVM 561

Query: 505 GERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYKLDVNEFRGNETVQLMIA 564
           GE HL++ L+        D + F       P P +R    AY+L +N+++G E+ +L++ 
Sbjct: 562 GENHLRLQLRDPRDGALHDAVMFNAYHGQPPPPRLR---AAYELTINDWQGRESPRLLLR 618

Query: 565 HIEP 568
           +IEP
Sbjct: 619 YIEP 622