Pairwise Alignments

Query, 569 a.a., ssDNA exonuclease RecJ from Pseudomonas simiae WCS417

Subject, 569 a.a., Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) from Pseudomonas fluorescens GW456-L13

 Score = 1062 bits (2746), Expect = 0.0
 Identities = 533/569 (93%), Positives = 550/569 (96%)

Query: 1   MRIDPRPLPAVLPFLGELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLL 60
           MRI+PR LP  LPFLG++PPLLTRLY ARGV SEAELDKSLARLIP+QQLKGIDAAVDLL
Sbjct: 1   MRIEPRLLPDTLPFLGDIPPLLTRLYVARGVLSEAELDKSLARLIPFQQLKGIDAAVDLL 60

Query: 61  VTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAV 120
           VTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRF+YGYGLTPEIVAV
Sbjct: 61  VTALEQRQRILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFDYGYGLTPEIVAV 120

Query: 121 ALQRAPQLLITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNPNQPGCEF 180
           AL+R P LLITVDNGISSVEGVAAAK AGL+VLVTDHHLPGDE P ADAIVNPNQPGCEF
Sbjct: 121 ALERQPHLLITVDNGISSVEGVAAAKKAGLKVLVTDHHLPGDERPLADAIVNPNQPGCEF 180

Query: 181 PSKALAGVGVIFYVLMALRARLRSLGWYDNTPQPNIGELLDLVALGSVADVVPLDANNRI 240
           PSKALAGVGVIFYVLMALRARLR LGWY + PQPNIGELLDLVALGSVADVVPLDANNRI
Sbjct: 181 PSKALAGVGVIFYVLMALRARLRELGWYTSRPQPNIGELLDLVALGSVADVVPLDANNRI 240

Query: 241 LVHQGLERIRAGRARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIEC 300
           LVHQGLERIRAGRARPGIKAILEVAKRD ARITSTDLGFI+GPRLNAAGRLDDMSLGIEC
Sbjct: 241 LVHQGLERIRAGRARPGIKAILEVAKRDHARITSTDLGFIVGPRLNAAGRLDDMSLGIEC 300

Query: 301 LLTTDFAAAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPYGLCLFDPEWHQG 360
           LLT D   AREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMP+GLCLFDPEWHQG
Sbjct: 301 LLTEDAGLAREMAAQLDGMNQDRKSIEQGMQREALAQLKDLPVESMPFGLCLFDPEWHQG 360

Query: 361 VIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVASQHPNLITKYGG 420
           VIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDAL+VVA+QHPNLITKYGG
Sbjct: 361 VIGILASRMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALSVVAAQHPNLITKYGG 420

Query: 421 HAMAAGLTLPEENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHA 480
           HAMAAGLTLPE NFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHA
Sbjct: 421 HAMAAGLTLPEANFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHA 480

Query: 481 GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVR 540
           GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFG+DRE+WPNPT++
Sbjct: 481 GPWGQHFPEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGIDREIWPNPTIK 540

Query: 541 WVELAYKLDVNEFRGNETVQLMIAHIEPR 569
           WVELAYKLD+NEFRGNETVQLMIAHIEPR
Sbjct: 541 WVELAYKLDLNEFRGNETVQLMIAHIEPR 569