Pairwise Alignments

Query, 569 a.a., ssDNA exonuclease RecJ from Pseudomonas simiae WCS417

Subject, 575 a.a., Single-stranded-DNA-specific exonuclease RecJ from Variovorax sp. SCN45

 Score =  516 bits (1329), Expect = e-151
 Identities = 282/560 (50%), Positives = 371/560 (66%), Gaps = 20/560 (3%)

Query: 20  PLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQRILIVGDFDAD 79
           PLL RL+AARGV+++ ELD  LARL+    L+G   A  LL  A+ Q +R+ IV D+D D
Sbjct: 23  PLLARLFAARGVRAKDELDDGLARLLSPDTLRGTHDAAVLLADAIAQDKRLCIVADYDCD 82

Query: 80  GATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRAPQLLITVDNGISSV 139
           GATA  VG  GLRLLGA +V YLVP+R   GYGLTP I          +LITVDNGI+SV
Sbjct: 83  GATACAVGVRGLRLLGAKNVSYLVPDRVVDGYGLTPPIAERVAASGADMLITVDNGIASV 142

Query: 140 EGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVGVIFYVLMALR 199
           EGVAAAKA GLQVLVTDHHLPG ELP AD +VNPNQPGCEF SK++AGVGV+FYVL+ALR
Sbjct: 143 EGVAAAKARGLQVLVTDHHLPGPELPLADVLVNPNQPGCEFESKSIAGVGVMFYVLLALR 202

Query: 200 ARLRSLGWYDNTPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERIRAGRARPGIK 259
           + LR  G +D   QP +  LL LVALG+VADVV LDANNR LV QGL RIRAG    G+ 
Sbjct: 203 SELRKRGVFDTATQPKLDALLPLVALGTVADVVKLDANNRRLVAQGLRRIRAGAMPAGVA 262

Query: 260 AILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDFAAAREMAAQLDGM 319
           A+ + A R A+  T+ D GF LGPR+NAAGRL DM+LGIECLLT D   A E+A  LDG+
Sbjct: 263 ALFKAASRHASAATTFDFGFALGPRINAAGRLADMTLGIECLLTDDAGRAEELARMLDGI 322

Query: 320 NQDRKSIEQGMQREALAQLKDL--------PVESMPYGLCLFDPEWHQGVIGILASRMKE 371
           N++R+ IE GM+ +AL   + L         + + P  + +FD  +H+GV+GI+ASR+K+
Sbjct: 323 NRERRDIEGGMRDQALLLAESLFSNGTDGEGIAAPPPAISVFDAGFHEGVVGIVASRIKD 382

Query: 372 RYFRPTIAFADAG----DGLLKGSGRSVQGFHIRDALAVVASQHPNLITKYGGHAMAAGL 427
           R+ RPT  FA +G    +  LKGSGRS+ GFH+RDAL +VA +HP ++ ++GGHAMAAG 
Sbjct: 383 RFHRPTFVFAASGAPGKEQELKGSGRSIPGFHLRDALDLVAKRHPGVLLRFGGHAMAAGC 442

Query: 428 TLPEENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHF 487
           T+  E+F  F + F    R  L +  LT ++ +DG +A E   ++L   L H   WGQ F
Sbjct: 443 TVAREHFETFEKGFAQVARELLADAALTRQIETDGPIAREYMRIDLVDTL-HREVWGQGF 501

Query: 488 PEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYK 547
             P F    ++V QR+VGE+HL + L+ +     +D + F     + P      V+LA++
Sbjct: 502 APPTFSEEVEVVSQRLVGEKHLSLKLRHQ--GQPIDAMWFSHTEPLPPR-----VKLAFR 554

Query: 548 LDVNEFRGNETVQLMIAHIE 567
           LD +E++G   ++ ++   E
Sbjct: 555 LDADEWQGVRRLRFLVEGAE 574