Pairwise Alignments

Query, 569 a.a., ssDNA exonuclease RecJ from Pseudomonas simiae WCS417

Subject, 572 a.a., single-stranded-DNA-specific exonuclease RecJ from Erwinia amylovora T8

 Score =  637 bits (1644), Expect = 0.0
 Identities = 337/559 (60%), Positives = 409/559 (73%), Gaps = 7/559 (1%)

Query: 10  AVLPFLGELPPLLTRLYAARGVQSEAELDKSLARLIPYQQLKGIDAAVDLLVTALEQRQR 69
           A LP   +L PLL RLYA RGV    EL++    L P+Q L GID AV +L  AL     
Sbjct: 16  AALP--ADLHPLLRRLYAHRGVSRACELERGARNLHPFQSLSGIDQAVTILQKALLDNLC 73

Query: 70  ILIVGDFDADGATASTVGTLGLRLLGAAHVDYLVPNRFEYGYGLTPEIVAVALQRAPQLL 129
           I+IVGDFDADGAT++ +  L LR +GA +V YLVPNRF+ GYGL+PE+V  A  R  QL+
Sbjct: 74  IMIVGDFDADGATSTALTVLSLRGMGAQNVKYLVPNRFDDGYGLSPEVVEQAAVRGAQLI 133

Query: 130 ITVDNGISSVEGVAAAKAAGLQVLVTDHHLPGDELPAADAIVNPNQPGCEFPSKALAGVG 189
           +TVDNGISS+ GVA A   G+ V+VTDHHLPG+ LP ADAIVNPN   C FPS+ALAGVG
Sbjct: 134 VTVDNGISSLAGVALAHQKGIAVIVTDHHLPGEILPDADAIVNPNLSDCAFPSRALAGVG 193

Query: 190 VIFYVLMALRARLRSLGWYDNTPQPNIGELLDLVALGSVADVVPLDANNRILVHQGLERI 249
           V FY+++ALRARLR  G   NT  PN+ ELLDLVALG+VADVVPLDANNRILV QGL RI
Sbjct: 194 VAFYLMLALRARLRDDGV--NT-LPNLAELLDLVALGTVADVVPLDANNRILVWQGLSRI 250

Query: 250 RAGRARPGIKAILEVAKRDAARITSTDLGFILGPRLNAAGRLDDMSLGIECLLTTDFAAA 309
           RAG+ RPGI+A+LE+A RDA ++ ++DLGF LGPRLNAAGRLDDMS+G+  LL+ D A A
Sbjct: 251 RAGKCRPGIRALLEIANRDARQLAASDLGFTLGPRLNAAGRLDDMSVGVALLLSEDLAQA 310

Query: 310 REMAAQLDGMNQDRKSIEQGMQREALAQLKDLPV--ESMPYGLCLFDPEWHQGVIGILAS 367
           R +A++LD +NQ RK IEQGMQ EAL     L    E++P G+ ++ PEWHQGV+GILAS
Sbjct: 311 RMLASELDALNQTRKEIEQGMQSEALTLCNRLESASEALPLGIAMYHPEWHQGVVGILAS 370

Query: 368 RMKERYFRPTIAFADAGDGLLKGSGRSVQGFHIRDALAVVASQHPNLITKYGGHAMAAGL 427
           R+KER+ RP IAFA AGDG+LKGSGRS+ G H+RD L  + + HP LI K+GGHAMAAGL
Sbjct: 371 RLKERFHRPVIAFAPAGDGMLKGSGRSIAGLHMRDVLERLDTLHPGLIVKFGGHAMAAGL 430

Query: 428 TLPEENFPLFAEAFDAEVRRQLREEDLTGRLLSDGTLAVEEFHLELARALRHAGPWGQHF 487
           +L E  F  F + F   V   L  E L G + SDG L  +E  L  A  LR AGPWGQ F
Sbjct: 431 SLQEAKFDEFRQRFADLVGDWLDAESLQGVVWSDGELMAQELTLPTAELLRDAGPWGQAF 490

Query: 488 PEPLFHGVFQLVEQRVVGERHLKVVLKSECGSVKLDGIAFGVDREVWPNPTVRWVELAYK 547
           PEP F G F+L++QR+VGERHLKV+++   G   LDGIAF VD  +WP+P V+ VELAYK
Sbjct: 491 PEPTFDGKFKLLQQRLVGERHLKVMVEPLGGGPLLDGIAFNVDTALWPDPAVKQVELAYK 550

Query: 548 LDVNEFRGNETVQLMIAHI 566
           LDVNE+RGN  VQL+I H+
Sbjct: 551 LDVNEYRGNRNVQLIIDHL 569